| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 713380 = | 9 (0.260) | 503 (15.440) | 45/100 | NT | 95.0% | intergenic (‑156/‑29) | ybfF/seqA | conserved hypothetical protein/regulatory protein for replication initiation |
| ? | W3110S.gb | = 4125340 | 45 (1.380) | coding (836/837 nt) | dam | DNA adenine methylase | |||||
Only 100 of 665 total aligned reads displayed.
GCAATATAGCTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/713452‑713380‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaatTATTTTTTCGC‑GGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTACGTGTGC < W3110S.gb/4125340‑4125271 CAATATAGCTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAA > 1:1655886/1‑71 ATAGCTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTAT > 1:75534/1‑71 ATAGCTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTAT > 1:1904105/1‑71 ATAGCTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTAT > 1:2532519/1‑71 ATAGCTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTAT > 1:2010663/1‑71 TAGCTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATT > 1:666095/1‑71 TAGCTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATT > 1:65699/1‑71 GCTGTAGAGTTCATCACCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTT < 1:1807119/71‑1 GTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTC > 1:3261379/1‑71 TTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTT < 1:1703726/62‑1 TTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTT < 1:1495333/62‑1 CATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGC‑GGGTG > 1:972281/1‑70 CATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGC‑GGGTG > 1:2491684/1‑70 CATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGC‑GGGTG > 1:211945/1‑70 ATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGC‑GGGTGAA < 1:574301/71‑1 ATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGC‑GGGTGA < 1:1158478/70‑1 ATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGC‑GGGTGA < 1:2845235/70‑1 TCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA < 1:2075540/54‑1 TCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA < 1:726317/54‑1 TCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA < 1:2786747/54‑1 ATCAACTTCAATCGTTTTCATCTTAATCGAGTGCAGTGTCTTAGCTGAATTATTTT < 1:2362575/56‑1 ATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGC‑GGGTGAAAC > 1:2389355/1‑70 ATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGC‑GGGTGAAAC < 1:2690698/70‑1 ATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGC‑GGGTGAAAC > 1:2267405/1‑70 ATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGC‑GGGTGAAAC > 1:2301263/1‑70 ATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGC‑GGGTGAAAC > 1:1116092/1‑70 ATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGC‑GGGTGAAAC > 1:3074197/1‑70 ATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGC‑GGGTGAAAC > 1:814688/1‑70 TCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGC‑GGGTGAAACGA < 1:2147134/71‑1 TCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGC‑GGGTGAAACGA < 1:1785558/71‑1 CAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGC‑GGGTGAAAC < 1:2958599/68‑1 AACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGC‑GGGTGAAACGA > 1:1964361/1‑69 AACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGC‑GGGTGAAACGA > 1:1555826/1‑69 AACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGC‑GGGTGAAACGA > 1:1603684/1‑69 ACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGC‑GGGTGAAACGACTC < 1:2585139/71‑1 ACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGC‑GGGTGAAACGACTC < 1:552333/71‑1 ACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGC‑GGGTGAAACGACTC < 1:2178795/71‑1 TCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGC‑GGGTGAAACGACTCCTG > 1:2721459/1‑71 TCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGC‑GGGTGAAACGACTCCTG > 1:2613368/1‑71 CAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGC‑GGGTGAAACGACTCCTG > 1:1303917/1‑70 TCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGC‑GGGTGAAACGACTCCTGGTTT > 1:1328889/1‑71 GTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGC‑GGGTGAAACGACTCCTGGTTTG < 1:1381778/70‑1 GTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGC‑GGGTGAAACGACTCCTGGTTTG < 1:2990696/70‑1 GTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGC‑GGGTGAAA > 1:2326748/1‑56 TTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGC‑GGGTGAAACGACTCCTGGTTTGTAC > 1:1034754/1‑70 TCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGC‑GGGTGAAACGACTCCTGGTTTGTACA < 1:789418/70‑1 TCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGC‑GGGTGAAACGACTCCTGGTTTGTACA < 1:1674638/70‑1 TCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGC‑GGGTGAAACGACTCCTGGTTTGTACA < 1:193640/70‑1 TTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGC‑GGGTGAAACGACTCCTGGTTTGTACAAAGC > 1:2105977/1‑69 ATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGC‑GGGTGAAACGACTCCTGGTTTGTACAAAGCCAG < 1:2513559/69‑1 ATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGC‑GGGTGAAACGACTCCTGGTTTGTACAAAGCC < 1:1249434/67‑1 ATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGC‑GGGTGAAACGACTCCTGGTTTGTACAAAGC < 1:456433/66‑1 ATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGC‑GGGTGAAACGACTCCTGGTTTGTACAAAGC < 1:49484/66‑1 TCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGC‑GGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAG < 1:939802/71‑1 TCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGC‑GGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAG < 1:1358081/71‑1 GCAGTGTCTTAGCTGAATTATTTTTTCGC‑GGGTGAAACGACTCCTGGTTTGTACAAAGCCATCAGTTCGTC > 1:1080445/1‑71 GCAGTGTCTTAGCTGAATTATTTTTTCGC‑GGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTC > 1:344482/1‑71 GCAGTGTCTTAGCTGAATTATTTTTTCGC‑GGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTC > 1:1578979/1‑71 GCAGTGTCTTAGCTGAATTATTTTTTCGC‑GGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTC > 1:1762999/1‑71 GCAGTGTCTTAGCTGAATTATTTTTTCGC‑GGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTC > 1:1846059/1‑71 CAGTGTCTTAGCTGAATTATTTTTTCGC‑GGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTC > 1:2660132/1‑70 CAGTGTCTTAGCTGAATTATTTTTTCGC‑GGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTC > 1:87933/1‑70 CAGTGTCTTAGCTGAATTATTTTTTCGC‑GGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTC > 1:303139/1‑70 CAGTGTCTTAGCTGAATTATTTTTTCGC‑GGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTC > 1:26283/1‑70 CAGTGTCTTAGCTGAATTATTTTTTCGC‑GGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTC > 1:3187503/1‑70 GTGTCTTAGCTGAATTATTTTTTCGC‑GGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCAC < 1:2767514/71‑1 GTGTCTTAGCTGAATTATTTTTTCGC‑GGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCAC < 1:2808341/71‑1 TGTCTTAGCTGAATTATTTTTTCGC‑GGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACC > 1:317051/1‑71 TGTCTTAGCTGAATTATTTTTTCGC‑GGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCAC < 1:91288/70‑1 GTCTTAGCTGAATTATTTTTTCGC‑GGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCT > 1:2421281/1‑71 GTCTTAGCTGAATTATTTTTTCGC‑GGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCT > 1:2473411/1‑71 GTCTTAGCTGAATTATTTTTTCGC‑GGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCA > 1:1269429/1‑68 TCTTAGCTGAATTATTTTTTCGC‑GGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTT > 1:708789/1‑71 TCTTAGCTGAATTATTTTTTCGC‑GGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTT < 1:2929727/71‑1 TCTTAGCTGAATTATTTTTTCGC‑GGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTT > 1:1050346/1‑71 TCTTAGCTGAATTATTTTTTCGC‑GGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTT > 1:3104965/1‑71 TCTTAGCTGAATTATTTTTTCGC‑GGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTT > 1:831310/1‑71 TCTTAGCTGAATTATTTTTTCGC‑GGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTT > 1:146973/1‑71 TCTTAGCTGAATTATTTTTTCGC‑GGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTT > 1:1525563/1‑71 TCTTAGCTGAATTATTTTTTCGC‑GGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTT > 1:1540248/1‑71 TCTTAGCTGAATTATTTTTTCGC‑GGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTT > 1:2576177/1‑71 TCTTAGCTGAATTATTTTTTCGC‑GGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTT < 1:2439743/71‑1 TCTTAGCTGAATTATTTTTTCGC‑GGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTC < 1:1191741/65‑1 AGCTGAATTATTTTTTCGC‑TGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTT < 1:2903014/69‑1 AGCTGAATTATTTTTTCGC‑GGGTGAAACGACTCCTGGTTTTTACAAAGCCAGCAGTTCGTCCACCTTTT < 1:1000663/69‑1 AGCTGAATTATTTTTTCGC‑GGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTA > 1:423177/1‑71 AGCTGAATTATTTTTTCGC‑GGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTA > 1:2876179/1‑71 AGCTGAATTATTTTTTCGC‑GGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTT < 1:1458107/69‑1 AGCTGAATTATTTTTTCGC‑GGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTT < 1:1220444/69‑1 AGCTGAATTATTTTTTCGC‑GGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTT < 1:609350/69‑1 AGCTGAATTATTTTTTCGC‑GGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTT < 1:3225006/69‑1 GCTGAATTATTTTTTCGCGGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTA < 1:3333282/71‑1 GCTGAATTATTTTTTCGCGGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTA < 1:2240743/71‑1 GCTGAATTATTTTTTCGC‑GGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTAC < 1:374932/71‑1 CTGAATTATTTTTTCGC‑GGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTACG < 1:524548/71‑1 CTGAATTATTTTTTCGC‑GGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTACG < 1:305849/71‑1 TGAATTATTTTTTCGC‑GGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTACGT > 1:2200244/1‑71 GAATTATTTTTTCGC‑GGGTGAAACGACTCCTGGTTTGTACAAAGC > 1:1413507/1‑45 TTATTTTTTCGC‑GGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTACGTGTGC > 1:1729773/1‑71 TTATTTTTTCGC‑GGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTACGTGT < 1:2036067/69‑1 GCAATATAGCTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/713452‑713380‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaatTATTTTTTCGC‑GGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTACGTGTGC < W3110S.gb/4125340‑4125271 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |