New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? W3110S.gb 713380 =9 (0.260)503 (15.440) 45/100 NT 95.0% intergenic (‑156/‑29) ybfF/seqA conserved hypothetical protein/regulatory protein for replication initiation
?W3110S.gb = 4125340 45 (1.380)coding (836/837 nt) dam DNA adenine methylase

Only 100 of 665 total aligned reads displayed.

GCAATATAGCTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  W3110S.gb/713452‑713380
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaatTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTACGTGTGC  <  W3110S.gb/4125340‑4125271
                                                                                                                                                
 CAATATAGCTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAA                                                                          >  1:1655886/1‑71
     ATAGCTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTAT                                                                      >  1:75534/1‑71
     ATAGCTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTAT                                                                      >  1:1904105/1‑71
     ATAGCTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTAT                                                                      >  1:2532519/1‑71
     ATAGCTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTAT                                                                      >  1:2010663/1‑71
      TAGCTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATT                                                                     >  1:666095/1‑71
      TAGCTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATT                                                                     >  1:65699/1‑71
        GCTGTAGAGTTCATCACCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTT                                                                   <  1:1807119/71‑1
           GTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTC                                                                >  1:3261379/1‑71
                 TTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTT                                                                   <  1:1703726/62‑1
                 TTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTT                                                                   <  1:1495333/62‑1
                   CATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTG                                                        >  1:972281/1‑70
                   CATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTG                                                        >  1:2491684/1‑70
                   CATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTG                                                        >  1:211945/1‑70
                    ATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAA                                                      <  1:574301/71‑1
                    ATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGA                                                       <  1:1158478/70‑1
                    ATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGA                                                       <  1:2845235/70‑1
                     TCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA                                                                       <  1:2075540/54‑1
                     TCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA                                                                       <  1:726317/54‑1
                     TCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA                                                                       <  1:2786747/54‑1
                       ATCAACTTCAATCGTTTTCATCTTAATCGAGTGCAGTGTCTTAGCTGAATTATTTT                                                                   <  1:2362575/56‑1
                       ATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAAC                                                    >  1:2389355/1‑70
                       ATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAAC                                                    <  1:2690698/70‑1
                       ATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAAC                                                    >  1:2267405/1‑70
                       ATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAAC                                                    >  1:2301263/1‑70
                       ATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAAC                                                    >  1:1116092/1‑70
                       ATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAAC                                                    >  1:3074197/1‑70
                       ATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAAC                                                    >  1:814688/1‑70
                        TCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGA                                                  <  1:2147134/71‑1
                        TCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGA                                                  <  1:1785558/71‑1
                         CAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAAC                                                    <  1:2958599/68‑1
                          AACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGA                                                  >  1:1964361/1‑69
                          AACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGA                                                  >  1:1555826/1‑69
                          AACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGA                                                  >  1:1603684/1‑69
                           ACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTC                                               <  1:2585139/71‑1
                           ACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTC                                               <  1:552333/71‑1
                           ACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTC                                               <  1:2178795/71‑1
                              TCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTG                                            >  1:2721459/1‑71
                              TCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTG                                            >  1:2613368/1‑71
                               CAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTG                                            >  1:1303917/1‑70
                                  TCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTT                                        >  1:1328889/1‑71
                                    GTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTG                                       <  1:1381778/70‑1
                                    GTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTG                                       <  1:2990696/70‑1
                                    GTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAA                                                     >  1:2326748/1‑56
                                       TTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTAC                                    >  1:1034754/1‑70
                                        TCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACA                                   <  1:789418/70‑1
                                        TCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACA                                   <  1:1674638/70‑1
                                        TCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACA                                   <  1:193640/70‑1
                                             TTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGC                               >  1:2105977/1‑69
                                                ATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAG                            <  1:2513559/69‑1
                                                ATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCC                              <  1:1249434/67‑1
                                                ATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGC                               <  1:456433/66‑1
                                                ATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGC                               <  1:49484/66‑1
                                                 TCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAG                         <  1:939802/71‑1
                                                 TCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAG                         <  1:1358081/71‑1
                                                       GCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCATCAGTTCGTC                   >  1:1080445/1‑71
                                                       GCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTC                   >  1:344482/1‑71
                                                       GCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTC                   >  1:1578979/1‑71
                                                       GCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTC                   >  1:1762999/1‑71
                                                       GCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTC                   >  1:1846059/1‑71
                                                        CAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTC                   >  1:2660132/1‑70
                                                        CAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTC                   >  1:87933/1‑70
                                                        CAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTC                   >  1:303139/1‑70
                                                        CAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTC                   >  1:26283/1‑70
                                                        CAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTC                   >  1:3187503/1‑70
                                                          GTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCAC                <  1:2767514/71‑1
                                                          GTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCAC                <  1:2808341/71‑1
                                                           TGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACC               >  1:317051/1‑71
                                                           TGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCAC                <  1:91288/70‑1
                                                            GTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCT              >  1:2421281/1‑71
                                                            GTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCT              >  1:2473411/1‑71
                                                            GTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCA                 >  1:1269429/1‑68
                                                             TCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTT             >  1:708789/1‑71
                                                             TCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTT             <  1:2929727/71‑1
                                                             TCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTT             >  1:1050346/1‑71
                                                             TCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTT             >  1:3104965/1‑71
                                                             TCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTT             >  1:831310/1‑71
                                                             TCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTT             >  1:146973/1‑71
                                                             TCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTT             >  1:1525563/1‑71
                                                             TCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTT             >  1:1540248/1‑71
                                                             TCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTT             >  1:2576177/1‑71
                                                             TCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTT             <  1:2439743/71‑1
                                                             TCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTC                   <  1:1191741/65‑1
                                                                 AGCTGAATTATTTTTTCGCTGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTT           <  1:2903014/69‑1
                                                                 AGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTTTACAAAGCCAGCAGTTCGTCCACCTTTT           <  1:1000663/69‑1
                                                                 AGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTA         >  1:423177/1‑71
                                                                 AGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTA         >  1:2876179/1‑71
                                                                 AGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTT           <  1:1458107/69‑1
                                                                 AGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTT           <  1:1220444/69‑1
                                                                 AGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTT           <  1:609350/69‑1
                                                                 AGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTT           <  1:3225006/69‑1
                                                                  GCTGAATTATTTTTTCGCGGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTA         <  1:3333282/71‑1
                                                                  GCTGAATTATTTTTTCGCGGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTA         <  1:2240743/71‑1
                                                                  GCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTAC        <  1:374932/71‑1
                                                                   CTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTACG       <  1:524548/71‑1
                                                                   CTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTACG       <  1:305849/71‑1
                                                                    TGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTACGT      >  1:2200244/1‑71
                                                                     GAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGC                               >  1:1413507/1‑45
                                                                        TTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTACGTGTGC  >  1:1729773/1‑71
                                                                        TTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTACGTGT    <  1:2036067/69‑1
                                                                                                                                                
GCAATATAGCTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  W3110S.gb/713452‑713380
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaatTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTACGTGTGC  <  W3110S.gb/4125340‑4125271

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.