| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 2018571 = | 0 (0.000) | 35 (1.050) | 7/102 | NT | 100% | coding (567/687 nt) | fliH | flagellar biosynthesis protein |
| ? | W3110S.gb | 2519723 = | NA (NA) | intergenic (+33/‑54) | nupC/insL | nucleoside (except guanosine) transporter/predicted transposase | |||||
ACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/2018637‑2018571‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCAC > W3110S.gb/2519723‑2519791 ACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCAT > 1:979674/1‑69ACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCAT > 1:720468/1‑69ACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCAT > 1:442709/1‑69ACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCAT > 1:1843154/1‑69 GTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTA < 1:540155/71‑1 GTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTA < 1:3286050/71‑1 GTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTA < 1:2973104/71‑1 CGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGG > 1:2748343/1‑71 CGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGG > 1:731620/1‑71 CGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGG > 1:359640/1‑71 CGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGG > 1:3041490/1‑71 CGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGG > 1:2557576/1‑71 CGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGG > 1:2050143/1‑71 CGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGG > 1:1297606/1‑71 ATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGG < 1:960364/71‑1 ATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGG < 1:3232945/71‑1 GAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGG < 1:2017546/64‑1 CTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTG < 1:1849346/71‑1 CTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTG < 1:1169361/71‑1 CCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAA < 1:2088766/71‑1 CCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAA < 1:814677/71‑1 CCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAA < 1:1252618/71‑1 CCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAA < 1:1668697/71‑1 CCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAA < 1:3299847/71‑1 TGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTATGCCTGATATGATTTAACGTGCC > 1:2396340/1‑71 TGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCC > 1:142367/1‑71 TGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCC > 1:539014/1‑71 TGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCC > 1:1436544/1‑71 TGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCC > 1:55730/1‑71 TGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCC > 1:3122119/1‑71 TGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCC > 1:3103890/1‑71 TGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCC > 1:1610881/1‑71 TGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCC > 1:2926146/1‑71 TGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCC > 1:2101632/1‑71 TGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGG > 1:1434737/1‑37 GTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAA > 1:640944/1‑71 GTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAA > 1:648749/1‑71 GTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAA > 1:1926247/1‑71 GTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAA > 1:1062406/1‑71 CCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCAC > 1:2302110/1‑71 CCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCA > 1:1693217/1‑70 CCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCA > 1:1773913/1‑70 CCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTG < 1:1512700/38‑1 CATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAAT < 1:55667/61‑1 CATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAAT < 1:3350107/61‑1 CATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAAT < 1:622135/61‑1 CATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAAT < 1:2606274/61‑1 CATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAAT < 1:840071/61‑1 CATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAAT < 1:217478/61‑1 ACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/2018637‑2018571‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCAC > W3110S.gb/2519723‑2519791 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |