New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	W3110S.gb	2018571 =	0 (0.000)	35 (1.050)	7/102	NT	100%	coding (567/687 nt)	fliH	flagellar biosynthesis protein
	?	W3110S.gb	2519723 =	NA (NA)					intergenic (+33/‑54)	nupC/insL	nucleoside (except guanosine) transporter/predicted transposase

CTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATG  >  W3110S.gb/2519658‑2519779                                                                  |                                                         cTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAgc                                                     >  1:1382845/1‑71 (MQ=255) cTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAgc                                                     >  1:3291419/1‑71 (MQ=255) cTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAgc                                                     >  1:3287560/1‑71 (MQ=255)    tCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAtcgc                                                   <  1:1956165/70‑1 (MQ=255)    tCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAgcgc                                                   <  1:960412/70‑1 (MQ=255)    tCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAgcgc                                                   <  1:3147018/70‑1 (MQ=255)    tCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAgcgc                                                   <  1:3015553/70‑1 (MQ=255)    tCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAgcgc                                                   <  1:2251596/70‑1 (MQ=255)    tCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAgcgc                                                   <  1:2182385/70‑1 (MQ=255)    tCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAgcgc                                                   <  1:1565600/70‑1 (MQ=255)          tCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACtt                                             <  1:2310618/70‑1 (MQ=255)          tCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACtt                                             <  1:801161/70‑1 (MQ=255)          tCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACtt                                             <  1:3084449/70‑1 (MQ=255)                               tAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTAc                            <  1:2066134/66‑1 (MQ=255)                               tAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTAc                            <  1:2214519/66‑1 (MQ=255)                               tAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTAc                            <  1:3328462/66‑1 (MQ=255)                               tAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTAc                            <  1:2511168/66‑1 (MQ=255)                                 aGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTAc                            <  1:2879272/64‑1 (MQ=255)                                       tacataAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTg                       <  1:629524/63‑1 (MQ=255)                                       tacataAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTg                       <  1:1432848/63‑1 (MQ=255)                                       tacataAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTg                       <  1:3187023/63‑1 (MQ=255)                                       tacataAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTg                       <  1:1917768/63‑1 (MQ=255)                                       tacataAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTg                       <  1:2940897/63‑1 (MQ=255)                                       tacataAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTg                       <  1:2669634/63‑1 (MQ=255)                                       tacataAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGAtt               >  1:33554/1‑71 (MQ=255)                                       tacataAAAAAGCCGGGGATAATTCCCATAAGCGCAAACTTAAGGGTTGTGGTATTACGCCTg                       <  1:2014151/63‑1 (MQ=255)                                          ataAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTaa            <  1:2213596/71‑1 (MQ=255)                                          ataAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTaa            <  1:560615/71‑1 (MQ=255)                                          ataAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTaa            <  1:1395362/71‑1 (MQ=255)                                                    cGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATg  <  1:1352178/71‑1 (MQ=39)                                                                  |                                                         CTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATG  >  W3110S.gb/2519658‑2519779

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.