| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 71265 | 35 (0.990) | 183 (7.060) +AGGGTCCCTAAGTC |
28/80 | NT | 89.6% | coding (879/879 nt) | araC | DNA‑binding transcriptional dual regulator |
| ? | W3110S.gb | 3464879 = | 23 (0.650) | intergenic (‑255/+46) | murB/rrfB | UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding/5S ribosomal RNA | |||||
Only 100 of 372 total aligned reads displayed.
GGCCAGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAATCCCTGCTT > W3110S.gb/71196‑71329 | gCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTGGCCGTCAAGTTGTCATAAag > 1:2043795‑M1/1‑69 (MQ=255) gCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAag < 1:2886404‑M1/71‑3 (MQ=255) gCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAag < 1:2653892‑M1/71‑3 (MQ=255) gCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAag < 1:2174062‑M1/71‑3 (MQ=255) ccAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagg < 1:613851‑M1/71‑4 (MQ=255) cAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGATTGATGTAGCCGTCAAGTTGTCATAAaggg < 1:1221157‑M1/71‑5 (MQ=255) cAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAaggg < 1:116815‑M1/71‑5 (MQ=255) cAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAaggg < 1:1072180‑M1/71‑5 (MQ=255) aGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggt < 1:3351117‑M1/71‑6 (MQ=255) aGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggt < 1:3028717‑M1/71‑6 (MQ=255) aGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggt < 1:385737‑M1/71‑6 (MQ=255) aGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggt < 1:915914‑M1/71‑6 (MQ=255) aGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggt < 1:85407‑M1/71‑6 (MQ=255) cccGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTaa > 1:1537357/1‑71 (MQ=255) cccGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTaa > 1:1112527/1‑71 (MQ=255) cccGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAag < 1:2061557‑M1/66‑3 (MQ=255) cccGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAag < 1:1781741‑M1/66‑3 (MQ=255) ccGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccc > 1:59422‑M1/1‑63 (MQ=255) ccGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccc > 1:2552760‑M1/1‑63 (MQ=255) cgagcgagTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATaa > 1:3307492/1‑62 (MQ=255) gcgagTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaag > 1:2155054‑M1/1‑59 (MQ=255) agTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccct < 1:1142443‑M1/65‑10 (MQ=255) agTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccc > 1:2913069‑M1/1‑56 (MQ=255) ttccgtgCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtcta > 1:2107087‑M1/4‑54 (MQ=255) ttccgtgCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagt > 1:1001788‑M1/4‑54 (MQ=255) ccgTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaa > 1:2353128‑M1/2‑52 (MQ=255) gTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacg < 1:2694599‑M1/71‑22 (MQ=255) gTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacg < 1:2496287‑M1/71‑22 (MQ=255) gTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCATACAAtt < 1:5750/71‑1 (MQ=255) tGCCGGTTGTGAAGAAAAAGTGAATGATGTATCCGTCAAGTTGTCATAAagggtccctaagtctaaaacg < 1:1714435‑M1/70‑22 (MQ=255) tGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacga < 1:1804795‑M1/71‑23 (MQ=255) tGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacga < 1:1559905‑M1/71‑23 (MQ=255) tGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacga < 1:424396‑M1/71‑23 (MQ=255) tGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacga < 1:647487‑M1/71‑23 (MQ=255) tGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacg < 1:3146321‑M1/70‑22 (MQ=255) ccGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagt > 1:3217871‑M1/1‑47 (MQ=255) ccGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagt > 1:2479059‑M1/1‑47 (MQ=255) ggTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtcta > 1:3074364‑M1/1‑45 (MQ=255) ggTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaag > 1:2837515‑M1/1‑45 (MQ=255) gTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGc < 1:669656/71‑1 (MQ=255) gTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGc < 1:2455573/71‑1 (MQ=255) gTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGc < 1:1338935/71‑1 (MQ=255) tgtgAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcc > 1:1123870‑M1/1‑42 (MQ=255) gtgAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcc > 1:2754753‑M1/1‑41 (MQ=255) agaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAa > 1:3158616‑M1/1‑37 (MQ=255) agaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGc < 1:2299019/64‑1 (MQ=255) aaatGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagt > 1:1247525‑M1/1‑34 (MQ=255) aaaaGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttc > 1:953907‑M1/1‑34 (MQ=255) aaaaGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttc < 1:587469‑M1/71‑38 (MQ=255) aaaaGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttc < 1:2400091‑M1/71‑38 (MQ=255) aaaaGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttc > 1:1941651‑M1/1‑34 (MQ=255) aaaGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcg < 1:1580522‑M1/71‑39 (MQ=255) aaaGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcg < 1:1233286‑M1/71‑39 (MQ=255) aaaGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcg < 1:930432‑M1/71‑39 (MQ=255) aGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccc < 1:1640644‑M1/39‑9 (MQ=255) aaTGATGTAGCCGTCAAGTTGTCATAAagggtcctaagtctaaaacgaaaggcccagtctttcgactgag < 1:1890709‑M1/70‑44 (MQ=255) aaTGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgag < 1:2092643‑M1/71‑45 (MQ=255) aaTGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgag < 1:2204249‑M1/71‑45 (MQ=255) aaTGATGTAGCCGTCAAGTTGTCATAAagggtccc < 1:678840‑M1/35‑9 (MQ=255) aaTGATGTAGCCGTCAAGTTGTCATAAagggtccc < 1:34544‑M1/35‑9 (MQ=255) tgatgTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagcc > 1:3294813‑M1/1‑25 (MQ=255) atgTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagcctt > 1:1841613‑M1/1‑23 (MQ=255) atgTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagcctt > 1:1622147‑M1/1‑23 (MQ=255) atgTAGCCGTCAAGTTGTCATAAagggtccctaagt > 1:1917182‑M1/1‑23 (MQ=255) tgTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggccca > 1:1734505‑M1/1‑22 (MQ=255) tgTAGCCGTCAAGTTGTCATAAagggtccataagtctaaaacgaaaggccca > 1:2970538‑M1/1‑22 (MQ=255) tAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagcctttcg > 1:2571936‑M1/1‑20 (MQ=255) tAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagcctttcg > 1:779327‑M1/1‑20 (MQ=255) gCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagcctttcgtt > 1:1671649‑M1/1‑18 (MQ=255) cGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGaa > 1:772009/1‑71 (MQ=255) cGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGaa > 1:865866/1‑71 (MQ=255) cGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGaa > 1:2122492/1‑71 (MQ=255) cGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGaa > 1:2626002/1‑71 (MQ=255) gTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgact > 1:1993414‑M1/1‑15 (MQ=255) gTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgact > 1:799150‑M1/1‑15 (MQ=255) gTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgact > 1:332073‑M1/1‑15 (MQ=255) gTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgact > 1:2421494‑M1/1‑15 (MQ=255) gTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgact > 1:509212‑M1/1‑15 (MQ=255) aaGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagcctttcgttttattt < 1:3247465‑M1/71‑60 (MQ=255) aaGTTGTCATAAagggtccctaagtctaaaacgaaaggccca > 1:1493332‑M1/1‑12 (MQ=255) aaGTTGTCATAAagggtccctaagtctaaaacgaaaggccca > 1:1302122‑M1/1‑12 (MQ=255) aaGTTGTCATAAagggtccctaagtctaaaacgaaaggccca > 1:3123889‑M1/1‑12 (MQ=255) aaGTTGTCATAAagggtccctaagtctaaaacgaa > 1:1456524‑M1/1‑12 (MQ=255) aaGTTGTCATAAagggtccctaagtctaaaacgaa > 1:757669‑M1/1‑12 (MQ=255) aaGTTGTCATAAagggtccataagtctaaaacgaa > 1:444054‑M1/1‑12 (MQ=255) ttGTCCTAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagcctttcgttttatttgac > 1:2596836‑M1/1‑9 (MQ=255) ttGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgac > 1:2011242‑M1/1‑9 (MQ=255) tGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagcctttcgttttatttgacc > 1:989431‑M1/1‑8 (MQ=255) tGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagcctttcgttttatttgacc > 1:1504610‑M1/1‑8 (MQ=255) tGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagcctttcgttttatttgacc > 1:2871264‑M1/1‑8 (MQ=255) tGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagcctttcgttttatttga > 1:1956850‑M1/1‑8 (MQ=255) tGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagcctttcgt < 1:1401905‑M1/60‑53 (MQ=255) tCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagcctttcgttttatttgaccg < 1:2385454‑M1/70‑65 (MQ=255) tCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagcctttcgttttatttgaccg < 1:2263349‑M1/70‑65 (MQ=255) tCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagcctttcgttttatttgaccg < 1:1364013‑M1/70‑65 (MQ=255) tCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagcctttcgttttatttgaccg < 1:2076925‑M1/70‑65 (MQ=255) cATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagcctttcgttttatttgaccg < 1:714990‑M1/69‑65 (MQ=255) aTAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagcctttcgttttatttgaccg < 1:3258454‑M1/68‑65 (MQ=255) tAAagggtccctaagtctaaaacgaaaggcccagtctttc < 1:3053808‑M1/40‑38 (MQ=255) aagggtccctaagtctaaaacgaaaggcccagtctttcga > 1:2256379‑M1/1‑1 (MQ=255) | GGCCAGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAATCCCTGCTT > W3110S.gb/71196‑71329 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |