| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 71265 | 35 (0.990) | 183 (7.060) +AGGGTCCCTAAGTC |
28/80 | NT | 89.6% | coding (879/879 nt) | araC | DNA‑binding transcriptional dual regulator |
| ? | W3110S.gb | 3464879 = | 23 (0.650) | intergenic (‑255/+46) | murB/rrfB | UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding/5S ribosomal RNA | |||||
Only 100 of 240 total aligned reads displayed.
CGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGCAGTTCCCTACTCTCG > W3110S.gb/3464811‑3464948 | ttccgtgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTaa < 1:3028929‑M2/3‑1 (MQ=255)ttccgtgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTaa < 1:3256285‑M2/3‑1 (MQ=255)ttccgtgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTa > 1:2688453‑M2/69‑70 (MQ=255)ttccgtgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTa > 1:2107087‑M2/69‑70 (MQ=255) ccgtgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTaaaa > 1:2349081‑M2/67‑71 (MQ=255) ccgtgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTaaaa > 1:584242‑M2/67‑71 (MQ=255) ccgtgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTaaaa > 1:3305942‑M2/67‑71 (MQ=255) gtgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACg < 1:1969955‑M2/7‑1 (MQ=255) tgccggttgtgaagaaaaagtgaatgatgtatccgtcaagttgtcataaagggtccctaagtcTAAAACg < 1:1714435‑M2/7‑1 (MQ=255) tgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACg < 1:3146321‑M2/7‑1 (MQ=255) tgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGa < 1:647487‑M2/8‑1 (MQ=255) tgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGa < 1:2050323‑M2/8‑1 (MQ=255) tgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGa < 1:1559905‑M2/8‑1 (MQ=255) tgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGa < 1:590676‑M2/8‑1 (MQ=255) ggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTa > 1:3074364‑M2/60‑61 (MQ=255) gttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACg < 1:864489‑M2/7‑1 (MQ=255) tgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGcc > 1:1123870‑M2/57‑70 (MQ=255) aagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTa > 1:2483822‑M2/53‑54 (MQ=255) aagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTc > 1:315700‑M2/53‑71 (MQ=255) aagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTc > 1:1651844‑M2/53‑71 (MQ=255) aagaaaaagtgaatgatgtaaccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTc > 1:2295690‑M2/53‑71 (MQ=255) aaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTATAACGAAAGGCCCAGTCTTTc < 1:778255‑M2/23‑1 (MQ=255) aaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTc > 1:616376‑M2/49‑71 (MQ=255) aaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTc < 1:2400091‑M2/23‑1 (MQ=255) aaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTc < 1:2286479‑M2/23‑1 (MQ=255) aaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTc < 1:3354959‑M2/23‑1 (MQ=255) aaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTc < 1:56888‑M2/23‑1 (MQ=255) aaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTc < 1:1729707‑M2/23‑1 (MQ=255) aaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTc > 1:1584252‑M2/49‑71 (MQ=255) tgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTg < 1:320691‑M2/28‑1 (MQ=255) tgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTg < 1:2386549‑M2/28‑1 (MQ=255) tgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTg < 1:768747‑M2/28‑1 (MQ=255) aatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAg < 1:2204249‑M2/30‑1 (MQ=255) aatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAg > 1:2260646‑M2/42‑71 (MQ=255) aatgatgtagccgtcaagttgtcataaagggtcctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAg < 1:1890709‑M2/30‑1 (MQ=255) tgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGcc > 1:3294813‑M2/40‑71 (MQ=255) atgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCt < 1:27919‑M2/33‑1 (MQ=255) atgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCt < 1:1313754‑M2/33‑1 (MQ=255) atgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCt < 1:93683‑M2/33‑1 (MQ=255) atgtagccgtcaagttgtcataaaggggccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCt < 1:2250898‑M2/33‑1 (MQ=255) tgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCa > 1:503934‑M2/37‑52 (MQ=255) tgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCa > 1:1478488‑M2/37‑52 (MQ=255) tgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCa > 1:42592‑M2/37‑52 (MQ=255) tgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCa > 1:183499‑M2/37‑52 (MQ=255) tgtagccgtcaagttgtcataaagggtccataagtcTAAAACGAAAGGCCCa > 1:2970538‑M2/37‑52 (MQ=255) tagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTc > 1:2373968‑M2/35‑70 (MQ=255) tagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCg > 1:2571936‑M2/35‑71 (MQ=255) gccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGtt > 1:955300‑M2/33‑71 (MQ=255) gccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGtt > 1:1671649‑M2/33‑71 (MQ=255) gtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACt > 1:799150‑M2/30‑56 (MQ=255) gtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACt > 1:1993414‑M2/30‑56 (MQ=255) cAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTa > 1:367272/1‑71 (MQ=34) cAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTa > 1:1068473/1‑71 (MQ=34) aGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTa < 1:202298/70‑1 (MQ=35) aagttgtcataaagggtccctaagtcTAAAACGaa > 1:2075066‑M2/27‑35 (MQ=255) aagttgtcataaagggtccctaagtcTAAAACGaa > 1:1230714‑M2/27‑35 (MQ=255) aagttgtcataaagggtccctaagtcTAAAACGaa > 1:3246538‑M2/27‑35 (MQ=255) aagttgtcataaagggtccctaagtcTAAAACGaa > 1:757669‑M2/27‑35 (MQ=255) aagttgtcataaagggtccctaagtcTAAAACGaa > 1:1515007‑M2/27‑35 (MQ=255) aagttgtcataaagggtccctaagtcTAAAACGaa > 1:676756‑M2/27‑35 (MQ=255) aagttgtcataaagggtccctaagtcTAAAACGaa > 1:2644107‑M2/27‑35 (MQ=255) aagttgtcataaagggtccctaagtcTAAAACGaa > 1:2062501‑M2/27‑35 (MQ=255) aagttgtcataaagggtccctaagtcTAAAACGaa > 1:2449978‑M2/27‑35 (MQ=255) aagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCa > 1:3123889‑M2/27‑42 (MQ=255) aagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCa > 1:1387689‑M2/27‑42 (MQ=255) aagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCa > 1:1302122‑M2/27‑42 (MQ=255) aagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCa > 1:2474372‑M2/27‑42 (MQ=255) aagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCa > 1:2096736‑M2/27‑42 (MQ=255) aagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTcttta > 1:791225‑M2/27‑48 (MQ=255) aagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTAttt < 1:1622967‑M2/45‑1 (MQ=255) aagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTAtt > 1:1749502‑M2/27‑70 (MQ=255) aagttgtcataaagggtccataagtcTAAAACGaa > 1:444054‑M2/27‑35 (MQ=255) agagCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTAttt < 1:1795750/70‑1 (MQ=35) ttgtcctaaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTgac > 1:2596836‑M2/24‑70 (MQ=255) ttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTgac > 1:1944630‑M2/24‑70 (MQ=255) tgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTtgacc > 1:994530‑M2/23‑69 (MQ=255) tgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTtgacc > 1:3323707‑M2/23‑69 (MQ=255) tgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTtgacc > 1:1504610‑M2/23‑69 (MQ=255) tgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTtgacc > 1:1540011‑M2/23‑69 (MQ=255) tgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGa > 1:1234881‑M2/23‑69 (MQ=255) tgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGa > 1:2900927‑M2/23‑69 (MQ=255) tgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGa > 1:200755‑M2/23‑69 (MQ=255) tgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGa > 1:2413693‑M2/23‑69 (MQ=255) tcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATttgaccg < 1:1410961‑M2/50‑4 (MQ=255) tcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATttgaccg < 1:147135‑M2/50‑4 (MQ=255) tcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATttgaccg < 1:2082804‑M2/50‑4 (MQ=255) gTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGcc < 1:1024329/71‑1 (MQ=34) cataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATttgaccg < 1:714990‑M2/50‑4 (MQ=255) ataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATttgaccg < 1:3258454‑M2/50‑4 (MQ=255) taaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTc < 1:3053808‑M2/23‑1 (MQ=255) cACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTgg > 1:1043019/1‑71 (MQ=34) aagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGa > 1:3310834‑M2/16‑40 (MQ=255) gtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATttgaccg < 1:512138‑M2/50‑4 (MQ=255) tccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCt < 1:2559697‑M2/33‑1 (MQ=255) taagtcTAAAACGAAAGGCCCAGTCTTTCGACTGa > 1:920676‑M2/7‑35 (MQ=255) taagtaTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTAt > 1:1204648‑M2/7‑49 (MQ=255) agtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGc > 1:2721634‑M2/5‑35 (MQ=255) tcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGtttt < 1:493762‑M2/41‑1 (MQ=255) aTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGCAGTTCCCTACTCTCg < 1:139584/71‑1 (MQ=34) aTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGCAGTTCCCTACTCTCg < 1:109356/71‑1 (MQ=34) | CGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGCAGTTCCCTACTCTCG > W3110S.gb/3464811‑3464948 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |