| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 205097 = | 33 (0.790) | 41 (1.170) +TTATAACA |
10/84 | NT | 64.9% | intergenic (+8/‑29) | rnhB/dnaE | ribonuclease HII, degrades RNA of DNA‑RNA hybrids/DNA polymerase III alpha subunit |
| ? | W3110S.gb | = 467579 | 20 (0.480) | intergenic (+125/‑28) | cof/ybaO | thiamin pyrimidine pyrophosphate hydrolase/predicted DNA‑binding transcriptional regulator | |||||
GGCGCAGCTTTGGGCCTGTCAAACGCGCACTGGGACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGATGTCTGAACCACGTTTCGTACACCTGCGGGTGCACAGCG > W3110S.gb/205043‑205165 | ggCGCAGCTTTGGGCCTGTCAAACGCGCACTGGGACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTAAAc > 1:3353218/1‑71 (MQ=255)ggCGCAGCTTTGGGCCTGTCAAACGCGCACTGGGACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTAAAc > 1:3528871/1‑71 (MQ=255) tttGGGCCTGTCAAACGCGCACTGGGACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTa > 1:269107/1‑60 (MQ=255) tttGGGCCTGTCAAACGCGCACTGGGACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTa > 1:1404720/1‑60 (MQ=255) tttGGGCCTGTCAAACGCGCACTGGGACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTa > 1:1999015/1‑60 (MQ=255) ggCCTGTCAAACGCGCACTGGGACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGaa < 1:3354287/70‑1 (MQ=255) ggCCTGTCAAACGCGCACTGGGACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGaa < 1:3964339/70‑1 (MQ=255) gTCAAACGCGCACTGGGACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTa < 1:2672821/51‑1 (MQ=255) tCAAACGCGCACTGGGACTTGCGTCCTGATTCTTGTGTCTAGATTAAGTAAACCGGa < 1:998924/57‑1 (MQ=255) tCAAACGCGCACTGGGACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTAAACCGGa < 1:2443360/57‑1 (MQ=255) tCAAACGCGCACTGGGACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTAAACCGGa < 1:3755492/57‑1 (MQ=255) aaaCGCGCACTGGGACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGATGTCTg < 1:1578436/70‑1 (MQ=255) aaaCGCGCACTGGGACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGATGTCTg > 1:2269789/1‑70 (MQ=255) aaaCGCGCACTGGGACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGATGTCTg > 1:1943866/1‑70 (MQ=255) aaaCGCGCACTGGGACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGATGTCTg > 1:69039/1‑70 (MQ=255) aaaCGCGCACTGGGACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGATGTCTg > 1:691936/1‑70 (MQ=255) cgcgCACTGGGACTTGCGTCCTCATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGATGTCTg > 1:921420/1‑67 (MQ=255) cTGGGACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGaa < 1:1414291/53‑1 (MQ=255) cTGGGACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGATGTCTGAACCACGttt > 1:3651427/1‑71 (MQ=255) agaaaataaaattaaaatgttataaGTCGAGATTAAGTAAAc < 1:1840791‑M1/17‑1 (MQ=255) agaaaataaaattaaaatgttataaGTCGAGATTAAGTAAAc < 1:1657125‑M1/17‑1 (MQ=255) agaaaataaaattaaaatgttataaGTCGAGATTAAGTAAACCGGAATCTg > 1:3051195‑M1/26‑51 (MQ=255) agaaaataaaattaaaatgttataaGTCGAGATTAAGTAAACCGGAATCTGAAGATg > 1:3648923‑M1/26‑57 (MQ=255) agaaaataaaattaaaatgttataaGTCGAGATTAAGTAAACCGGAATCTGAAGATg > 1:3502529‑M1/26‑57 (MQ=255) agaaaataaaattaaaatgttataaGTCAAGATTAAGTAAACCGGAATCTg > 1:3531083‑M1/26‑51 (MQ=255) gaaaataaaattaaaatgttataaGTCGAGATTAAGTAAACCg < 1:4002207‑M1/19‑1 (MQ=255) gaaaataaaattaaaatgttataaGTCGAGATTAAGTAAACCGGAATCTg > 1:131127‑M1/25‑50 (MQ=255) gaaaataaaattaaaatgttataaGTCGAGATTAAGTAAACCGGAATCTg > 1:1536823‑M1/25‑50 (MQ=255) gaaaataaaattaaaatgttataaGTCGAGATTAAGTAAACCGGAATCTg > 1:2590023‑M1/25‑50 (MQ=255) gggACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGATGTCTGAACCACGTTTCg > 1:3875471/1‑71 (MQ=255) gggACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGATGTCTGAACCACGTTTCg > 1:3879925/1‑71 (MQ=255) gggACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGATGTCTGAACCACGTTTCg > 1:1588245/1‑71 (MQ=255) aaaataaaattaaaatgttataaGTCTAGATTAAGTAAACCGGAATCTGAAGAt > 1:1021162‑M1/24‑54 (MQ=255) aaaataaaattaaaatgttataaGTCGAGATTAAGTAAACCGGAATCTg > 1:1123161‑M1/24‑49 (MQ=255) aaaataaaattaaaatgttataaGTCGAGATTAAGTAAACCGGAATCTGaa > 1:165369‑M1/24‑51 (MQ=255) aaaataaaattaaaatgttataaGTCGAGATTAAGTAAACCGGAATCTGaa > 1:4027146‑M1/24‑51 (MQ=255) aaaataaaattaaaatgttataaGTCGAGATTAAGTAAACCGGAATCTGAAGAt > 1:832796‑M1/24‑54 (MQ=255) ggACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGATGTCTGAACCACGttt < 1:2367060/68‑1 (MQ=255) aaataaaattaaaatgttataaGTCGAGATTAAGTAAACCGGa > 1:2180657‑M1/23‑43 (MQ=255) aaataaaattaaaatgttataaGTCGAGATTAAGTAAACCGGAATCTGaa < 1:3222399‑M1/28‑1 (MQ=255) gACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGaa < 1:3702800/49‑1 (MQ=255) aataaaattaaaatgttataaGTCGAGATTAAGTaaa < 1:692808‑M1/16‑1 (MQ=255) aataaaattaaaatgttataaGTCGAGATTAAGTa < 1:1622996‑M1/14‑1 (MQ=255) aataaaattaaaatgttataaGTCGAGATTAAGTAAACCGGaa < 1:625683‑M1/22‑1 (MQ=255) aataaaattaaaatgttataaGTCGAGATTAAGTAAACCGGaa < 1:3709222‑M1/22‑1 (MQ=255) aataaaattaaaatgttataaGTCGAGATTAAGTAAACCGGa > 1:670802‑M1/22‑42 (MQ=255) aataaaattaaaatgttataaGTCGAGATTAAGTAAACCGGAAt < 1:902470‑M1/23‑1 (MQ=255) aataaaattaaaatgttataaGTCGAGATTAAGTAAACCGGAATc < 1:177783‑M1/24‑1 (MQ=255) aataaaattaaaatgttataaGTCGAGATTAAGTAAACCGGAATc < 1:3092252‑M1/24‑1 (MQ=255) aataaaattaaaatgttataaGTCGAGATTAAGTAAACCGGAATc < 1:1200577‑M1/24‑1 (MQ=255) aataaaattaaaatgttataaGTCGAGATTAAGTAAACCGGAATc < 1:1936065‑M1/24‑1 (MQ=255) aataaaattaaaatgttataaGTCGAGATTAAGTAAACCGGAATCTGAAGatgac < 1:305456‑M1/34‑3 (MQ=255) aataaaattaaaatgttataaGTCGAGATTAAGTAAACCGGAATCTGAAGAt < 1:1855681‑M1/31‑1 (MQ=255) aataaaattaaaatgttataaGTCGAGATTAAGTAAACCGGAATCTGAAGAt < 1:2023738‑M1/31‑1 (MQ=255) ataaaattaaaatgttataaGTCGAGATTAAGTaaa > 1:2927099‑M1/21‑36 (MQ=255) ataaaattaaaatgttataaGTCGAGATTAAGTaaa > 1:2762513‑M1/21‑36 (MQ=255) ataaaattaaaatgttataaGTCGAGATTAAGTAAACCgg > 1:889428‑M1/21‑40 (MQ=255) ataaaattaaaatgttataaGTCGAGATTAAGTAAACCgg > 1:192488‑M1/21‑40 (MQ=255) ataaaattaaaatgttataaGTCGAGATTAAGTAAACCgg > 1:2397748‑M1/21‑40 (MQ=255) ataaaattaaaatgttataaGTCGAGATTAAGTAAACCgg > 1:2697317‑M1/21‑40 (MQ=255) ataaaattaaaatgttataaGTCGAGATTAAGTAAACCGGa > 1:3574378‑M1/21‑41 (MQ=255) ataaaattaaaatgttataaGTCGAGATTAAGTAAACCGGAATCTGAAGa < 1:2951727‑M1/30‑1 (MQ=255) ataaaattaaaatgttataaGTCGAGATTAAGTAAACCGGAATCTGAAGa < 1:2907512‑M1/30‑1 (MQ=255) ttGCGTCCTGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGATGTCTGa < 1:1823331/55‑1 (MQ=255) aaattaaaatgttataaGTCGAGATTAAGTAAACCGGAATCTGAAGa < 1:3915495‑M1/30‑1 (MQ=255) gCGTCCTGATTCTTGTGTCGAGATTAAGTAAACCGGAAt > 1:1525764/1‑39 (MQ=255) attaaaatgttataaGTCGAGATTAAGTAAACCGGAATCTGaa > 1:672460‑M1/16‑43 (MQ=255) tCCTGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGATGt < 1:679834/46‑1 (MQ=255) tCCTGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGATGTCTGAACCACGtt < 1:2542578/58‑1 (MQ=255) aaaatgttatatGTCGAGATTAAGTAAACCGGAATCTGAAGATg > 1:621087‑M1/13‑44 (MQ=255) aaaatgttataaGTCGAGATTAAGTAAACCGGAATCTGaa < 1:2597597‑M1/28‑1 (MQ=255) cTGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGa > 1:2718685/1‑41 (MQ=255) cTGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGa > 1:812219/1‑41 (MQ=255) cTGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGa > 1:184417/1‑41 (MQ=255) cTGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGa > 1:2845683/1‑41 (MQ=255) cTGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGa > 1:226215/1‑41 (MQ=255) tgttataaGTCGAGATTAAGTAAACCGGAATCTGaa > 1:3143582‑M1/9‑36 (MQ=255) tgttataaGTCGAGATTAAGTAAACCGGAATCTGaa > 1:411363‑M1/9‑36 (MQ=255) gtgtCGAGATTAAGTAAACCGGAATCTGAAGATGTCTGAACCACGTTTCGTacac > 1:2333676/1‑55 (MQ=255) gtgtCGAGATTAAGTAAACCGGAATCTGAAGATGTCTGAACCACGTTTCGTaca > 1:3714956/1‑54 (MQ=255) gtgtCGAGATTAAGTAAACCGGAATCTGAAGATGTCTGAACCACGTTTCGTaca > 1:1117301/1‑54 (MQ=255) gtgtCGAGATTAAGTAAACCGGAATCTGAAGATGTCTGAACCACGTTTCGTACACCTGCGGGTGCACAGc < 1:2276999/70‑1 (MQ=255) gtgtCGAGATTAAGTAAACCGGAATCTGAAGATGTCTGAACCACGTTTCGTACACCTGCGGGTGCACAGc < 1:484680/70‑1 (MQ=255) gtgtCGAGATTAAGTAAACCGGAATCTGAAGATGTCTGAACCACGTTTCGTACACCTGCGGGTGCACAGc < 1:758336/70‑1 (MQ=255) gtgtCGAGATTAAGTAAACCGGAATCTGAAGATGTCTGAACCACGTTTCGTACACCTGCGGGTGCACAGc < 1:3332553/70‑1 (MQ=255) tgtCGAGATTAAGTAAACCGGAATCTGAAGATGTCTGAACCACGTTTCGTACACCTGCGGGTGCACAGc < 1:3059169/69‑1 (MQ=255) tgtCGAGATTAAGTAAACCGGAATCTGAAGATGTCTGAACCACGTTTCGTACACCTGCGGGTGCACAGCg < 1:1861081/70‑1 (MQ=255) gtCGAGATTAAGTAAACCGGAATCTGAAGATGTCTGAACCACGTTTCGTa > 1:1357287/1‑50 (MQ=255) | GGCGCAGCTTTGGGCCTGTCAAACGCGCACTGGGACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGATGTCTGAACCACGTTTCGTACACCTGCGGGTGCACAGCG > W3110S.gb/205043‑205165 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |