| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 2018571 = | 1 (0.020) | 32 (0.810) | 17/94 | NT | 97.1% | coding (567/687 nt) | fliH | flagellar biosynthesis protein |
| ? | W3110S.gb | 2519723 = | NA (NA) | intergenic (+33/‑54) | nupC/insL | nucleoside (except guanosine) transporter/predicted transposase | |||||
ACCCGGATGATCTGCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGT > W3110S.gb/2018501‑2018639 | aCCCGGATGATCTGCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCgg < 1:554668/71‑1 (MQ=255) gtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatgg < 1:3578946‑M1/2‑1 (MQ=255) gtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatgg < 1:3406318‑M1/2‑1 (MQ=255) gtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatgg < 1:3074223‑M1/2‑1 (MQ=255) tgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatgtg > 1:2352009‑M1/69‑69 (MQ=255) tgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatggg > 1:3259789‑M1/69‑71 (MQ=255) tgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatggg > 1:1659575‑M1/69‑71 (MQ=255) tgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatggg > 1:2308695‑M1/69‑71 (MQ=255) tgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatggg > 1:2408128‑M1/69‑71 (MQ=255) tgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatggg > 1:2859834‑M1/69‑71 (MQ=255) tgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatggg > 1:3506265‑M1/69‑71 (MQ=255) tgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatggg > 1:4035565‑M1/69‑71 (MQ=255) tgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatggg > 1:404803‑M1/69‑71 (MQ=255) tgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatggg > 1:450132‑M1/69‑71 (MQ=255) tgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatggg > 1:965311‑M1/69‑71 (MQ=255) tgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatg > 1:271544‑M1/69‑69 (MQ=255) ggATGATCTGCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCg < 1:1771291/71‑1 (MQ=255) agagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCg > 1:1037790‑M1/67‑71 (MQ=255) agtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGAt > 1:758692‑M1/65‑71 (MQ=255) agtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGAt > 1:1923137‑M1/65‑71 (MQ=255) tgatCTGCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATc > 1:3765822/1‑71 (MQ=255) attcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCa > 1:416139‑M1/61‑71 (MQ=255) tGCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCAC > 1:2222360‑M1/1‑70 (MQ=255) catcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGAt < 1:112903‑M1/7‑1 (MQ=255) catcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGAt < 1:3818004‑M1/7‑1 (MQ=255) catcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCAccc < 1:1667531‑M1/14‑1 (MQ=255) catcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCAccc < 1:2924271‑M1/14‑1 (MQ=255) cAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTCCATGGCTGGCGCTTGCGGGGCGATCCCACCat < 1:3009117‑M1/71‑3 (MQ=255) tcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTc > 1:1666623‑M1/56‑71 (MQ=255) tcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTc > 1:1621014‑M1/56‑71 (MQ=255) tcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTc > 1:1463867‑M1/56‑71 (MQ=255) ggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCa < 1:1553821‑M1/18‑1 (MQ=255) cacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATc < 1:313616‑M1/20‑1 (MQ=255) cacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATc < 1:1515960‑M1/20‑1 (MQ=255) acgttaaatcatatcaggcgttataccacaacccttaagttagcgcttatg > 1:825970‑M1/51‑51 (MQ=255) gttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTg < 1:58133‑M1/23‑1 (MQ=255) aaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTggcg < 1:1151711‑M1/26‑1 (MQ=255) aaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTggcg < 1:2454226‑M1/26‑1 (MQ=255) atatGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaactta < 1:2866044‑M1/71‑16 (MQ=255) atatGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaactta < 1:2782933‑M1/71‑16 (MQ=255) tatGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaactta < 1:3728676‑M1/70‑16 (MQ=255) tatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTa > 1:767801‑M1/40‑71 (MQ=255) tatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTa > 1:2980600‑M1/40‑71 (MQ=255) tcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTaaa > 1:1563615‑M1/38‑71 (MQ=255) ggCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttga < 1:3610749‑M1/71‑24 (MQ=255) ggCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttga < 1:2165159‑M1/71‑24 (MQ=255) ggCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttg < 1:1639222‑M1/70‑23 (MQ=255) ggCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataag > 1:3844491‑M1/1‑48 (MQ=255) gcgcTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaa < 1:3098104‑M1/71‑25 (MQ=255) gtaataccacaacccttaagttagcgcttatTGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTcc > 1:1165833‑M1/32‑71 (MQ=255) ccTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaac > 1:2252440‑M1/1‑41 (MQ=255) ccTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaac > 1:3155921‑M1/1‑41 (MQ=255) ataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTccgcc > 1:2670033‑M1/29‑71 (MQ=255) ataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTccgcc > 1:1433557‑M1/29‑71 (MQ=255) ataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTccgc < 1:1084707‑M1/42‑1 (MQ=255) tAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctg > 1:1043009‑M1/1‑38 (MQ=255) tAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctg > 1:2449087‑M1/1‑38 (MQ=255) tAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatc > 1:1047760‑M1/1‑38 (MQ=255) tAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaaggg > 1:726580‑M1/1‑38 (MQ=255) ccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCAt < 1:826631‑M1/19‑1 (MQ=255) ccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATc < 1:138908‑M1/20‑1 (MQ=255) ccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATc < 1:407840‑M1/20‑1 (MQ=255) ccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGAt < 1:1199403‑M1/46‑1 (MQ=255) ccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGAt < 1:2333749‑M1/46‑1 (MQ=255) ccacaacccttaagttagcgcttatGGGCGATCCCACCCTCAATc < 1:1693069‑M1/20‑1 (MQ=255) cacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATg > 1:257986‑M1/25‑71 (MQ=255) ttGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatg > 1:72773‑M1/1‑33 (MQ=255) ttGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatg > 1:67982‑M1/1‑33 (MQ=255) ttGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatg > 1:2204347‑M1/1‑33 (MQ=255) ttGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatg > 1:560124‑M1/1‑33 (MQ=255) ttGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatg > 1:2361697‑M1/1‑33 (MQ=255) ttGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaa > 1:4057624‑M1/1‑33 (MQ=255) ttGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaa > 1:4023003‑M1/1‑33 (MQ=255) tGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaa > 1:3293667‑M1/1‑32 (MQ=255) tGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaa > 1:2478690‑M1/1‑32 (MQ=255) gCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgc < 1:3090806‑M1/70‑40 (MQ=255) gCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgc < 1:2633497‑M1/70‑40 (MQ=255) ccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGaa < 1:1068034‑M1/49‑1 (MQ=255) cttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTaaa > 1:1835629‑M1/18‑51 (MQ=255) ttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGAt < 1:1229101‑M1/55‑1 (MQ=255) ctggcGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcct > 1:1026550‑M1/1‑25 (MQ=255) ttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTa > 1:37736‑M1/12‑43 (MQ=255) ttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTa > 1:2124914‑M1/12‑43 (MQ=255) agcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACg < 1:1988989‑M1/62‑1 (MQ=255) cgcTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggt < 1:1122093‑M1/71‑51 (MQ=255) cgcTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggt < 1:3506166‑M1/71‑51 (MQ=255) gcTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtg > 1:3892821‑M1/1‑20 (MQ=255) gcTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtg > 1:3607410‑M1/1‑20 (MQ=255) tGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAg > 1:248758‑M1/2‑51 (MQ=255) tGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAgtgt > 1:2668807‑M1/2‑70 (MQ=255) GGGCGATCCCACCCTCCATCCTGGCGTCTGTAAAGTCTCCGCCGATGa > 1:2145043‑M1/1‑48 (MQ=255) GGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGa > 1:2586984‑M1/1‑48 (MQ=255) | ACCCGGATGATCTGCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGT > W3110S.gb/2018501‑2018639 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |