| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2412225 | NA (NA) | 76 (1.810) | 31/100 | NT | 77.6% | intergenic (‑55/‑782) | insA/yfbQ | IS1 element protein/predicted aminotransferase |
| ? | W3110S.gb | = 3748807 | 22 (0.520) | coding (176/984 nt) | tnaB | tryptophan transporter of low affinity | |||||
GAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCG > W3110S.gb/2412163‑2412293 | gAAGCCACTGTAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGc < 1:2848427/71‑1 (MQ=255)gAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGc < 1:7211/71‑1 (MQ=255)gAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGc > 1:1500967/1‑71 (MQ=255) aaGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGc < 1:2537545/70‑1 (MQ=255) aCTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTca < 1:3643169/71‑1 (MQ=255) cTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTcac < 1:3247773/71‑1 (MQ=255) ggAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACAt > 1:2584511/1‑71 (MQ=255) cTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGc < 1:3986532/55‑1 (MQ=255) cTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGc < 1:1768056/55‑1 (MQ=255) cAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGa > 1:2708351/1‑55 (MQ=255) cAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTcaca > 1:933769/1‑61 (MQ=255) cAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTcaca > 1:2756984/1‑61 (MQ=255) cAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGt > 1:3864918/1‑70 (MQ=255) cAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGt > 1:3885923/1‑70 (MQ=255) cAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGt > 1:215680/1‑70 (MQ=255) aaaaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGATTca < 1:658147/58‑1 (MQ=255) aaaaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTca < 1:2602488/58‑1 (MQ=255) aaaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTca < 1:3940605/57‑1 (MQ=255) aaaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTtat < 1:1077931/71‑1 (MQ=255) aaaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTtat < 1:1243559/71‑1 (MQ=255) aaaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTtat < 1:136474/71‑1 (MQ=255) aaaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTtat < 1:183329/71‑1 (MQ=255) atcatACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTca < 1:3055456/49‑1 (MQ=255) atcatACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTca < 1:3644175/49‑1 (MQ=255) atcatACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTg < 1:1451307/71‑1 (MQ=255) tcatACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGtt < 1:3324438/55‑1 (MQ=255) tcatACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTtat < 1:902767/62‑1 (MQ=255) tcatACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTtat < 1:3864682/62‑1 (MQ=255) taatACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGa > 1:3982305/3‑44 (MQ=255) atACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTg > 1:1938066/1‑51 (MQ=255) atACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTg > 1:2661726/1‑51 (MQ=255) atACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTg > 1:1280375/1‑51 (MQ=255) atACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTg > 1:862360/1‑51 (MQ=255) atACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAg > 1:1973887/1‑71 (MQ=255) atACACTAAATCAGAAAGTAGGCACCATCACCAAAAAAGCGACTCACATTg > 1:2908318/1‑51 (MQ=25) cacTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGa > 1:723057/1‑39 (MQ=255) cTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCg < 1:1470984/36‑1 (MQ=255) cTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGAt < 1:395511/71‑1 (MQ=255) cTAAATCAGTAAGTT‑GCAGCATCACCAAAAACGCGACTCACATTGTTCCGTtat < 1:2822351/54‑1 (MQ=37) aaaTCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATg > 1:530774/1‑57 (MQ=255) aaTCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATca < 1:3823325/70‑1 (MQ=255) aTCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTg < 1:3649192/59‑1 (MQ=255) tCAGTAAGTTGGCAGCATCACCAAAAAATCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAg < 1:2461017/71‑1 (MQ=255) tCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATaa > 1:3433779/1‑52 (MQ=255) tCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATaa > 1:2285904/1‑52 (MQ=255) tCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAg < 1:492551/71‑1 (MQ=255) tCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAg < 1:2406072/71‑1 (MQ=255) cAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAg > 1:3761712/1‑70 (MQ=255) aGTAAGTTGGCAGCATCACCAAAAACGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGaa < 1:1278729/71‑1 (MQ=255) aaGTTGGCAGCATCACCAAAAAAGCGACTCACATTGtt < 1:576314/38‑1 (MQ=255) aGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAatata > 1:3786756/1‑71 (MQ=255) ttGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATc < 1:609092/71‑1 (MQ=255) cagcaTCACCAAAAAAGCGACTCACATTGTTCCGTtat < 1:2796842/38‑1 (MQ=255) gcaTCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAg < 1:977665/57‑1 (MQ=255) caTCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAggg < 1:2348563/71‑1 (MQ=255) aTCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTg < 1:3431156/42‑1 (MQ=255) aTCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAggg < 1:1822670/70‑1 (MQ=255) aTCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGa > 1:1716694/1‑71 (MQ=255) aTCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGa > 1:854049/1‑71 (MQ=255) cACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGaa > 1:3706795/1‑55 (MQ=255) cACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGaa > 1:3524154/1‑55 (MQ=255) cACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGaa > 1:1248589/1‑55 (MQ=255) cACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGaa > 1:2348795/1‑55 (MQ=255) aCCAAAAAAGGGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAata > 1:1447091/1‑56 (MQ=255) aCCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGa > 1:210654/1‑46 (MQ=255) aCCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGa > 1:2428749/1‑46 (MQ=255) aCCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATcaca > 1:2144860/1‑51 (MQ=255) aCCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATcaca > 1:1268642/1‑51 (MQ=255) aCCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGaa < 1:2064118/54‑1 (MQ=255) aCCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGaa > 1:365598/1‑54 (MQ=255) aCCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCa > 1:1074282/1‑64 (MQ=255) aCCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCg > 1:1119736/1‑71 (MQ=255) aCCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCg > 1:3905356/1‑71 (MQ=255) aCCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCg > 1:3674128/1‑71 (MQ=255) | GAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCG > W3110S.gb/2412163‑2412293 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |