| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 70061 = | 19 (0.490) | 93 (3.080) +CGCGTACAACT |
18/80 | NT | 71.9% | intergenic (‑13/‑326) | araB/araC | L‑ribulokinase/DNA‑binding transcriptional dual regulator |
| ? | W3110S.gb | 236044 = | 74 (1.910) | intergenic (‑42/‑23) | rnhA/dnaQ | ribonuclease HI, degrades RNA of DNA‑RNA hybrids/DNA polymerase III epsilon subunit | |||||
Only 100 of 168 total aligned reads displayed.
AGATTAGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/70130‑70061‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGAAACCA > W3110S.gb/236044‑236112 ||||||||||| AGATTAGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGAC > 1:985269/1‑71AGATTAGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGAC > 1:368762/1‑71 CGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTTGGACGCGTAC < 1:3680974/71‑1 CGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTTGGACGCGTAC < 1:3196164/71‑1 GGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTTGGACGCGTAC > 1:7017/1‑70 CCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTTGGACGCGTACAACT > 1:786357/1‑70 CTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTTGGACGCGTACAACTC < 1:98137/70‑1 CTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTTGGACGCGTACAACTC < 1:1083444/70‑1 CTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTTGGACGCGTACAACTC < 1:3683552/70‑1 CTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTTGGACGCGTACAACTC < 1:3339491/70‑1 CTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTTGGACGCGTACAACTC < 1:2660980/70‑1 CTACCTGACGCTTTTTATCG‑AACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAG > 1:4636/1‑71 ACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGT > 1:1219679/1‑71 ACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCG‑TATTTTTGGACGCGTACAACTCAAGT > 1:3171729/1‑71 CCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTTGGACGCGTACAACTCAAGT > 1:1037840/1‑71 CCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTTGGACGCGTACAACTCAAG > 1:1729792/1‑70 GACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTTGGACGCGTACAACTCAAGTCT > 1:2969959/1‑70 GACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTTGGACGCGTACAACTCAAGTCT > 1:246563/1‑70 GACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTTGGACGCGTACAACTCAAGTCT > 1:906766/1‑70 GACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAA > 1:2103132/1‑65 GACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAA > 1:513346/1‑65 ACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTTGGACGCGTACAACTCAAGTCT < 1:1742174/69‑1 CTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATA < 1:2971112/71‑1 CTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATA < 1:274410/71‑1 TTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAA > 1:1609636/1‑71 TCGCAACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACC < 1:1135664/71‑1 GCAACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGC < 1:2347518/71‑1 GCAACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGC < 1:2430724/71‑1 CAACTCTCTACTGTTTCTCCATACCCGTTTTTTTTGGACGCGTACAACTCAAGTCTGACATA < 1:2485217/62‑1 CAACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCT < 1:153753/71‑1 AACTCTCTACTGTTTCTCCATACCCGTTTTTTTTGGACGCGTACAACTCAAGTCTGACATATATGACCGC < 1:593958/70‑1 ACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTAT > 1:3021809/1‑71 CTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATG < 1:3286076/71‑1 CTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATG < 1:1994515/71‑1 TCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATG < 1:1150163/70‑1 TCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTAT > 1:936964/1‑69 CTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAA > 1:2255370/1‑46 CTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAA > 1:3571635/1‑46 TCTACTGTTTCTCCATACCCGTTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAG > 1:3371063/1‑71 TCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGT‑CAACTCAAGTCTGACATAAATGACCGCTATGAG < 1:3245208/69‑1 TACTGTTTCTCCATACCCGTTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAG < 1:1294865/69‑1 TACTGTTTCTCCATACCCGTTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAG < 1:1018958/69‑1 TACTGTTTCTCCATACCCG‑TTTTTTTGGCCGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCAC > 1:2066024/1‑71 TACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAG < 1:1433196/68‑1 TACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAG < 1:1403750/68‑1 TACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAG < 1:3484571/68‑1 TACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAG < 1:1658330/68‑1 TACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAG < 1:2139220/68‑1 TACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTA > 1:746247/1‑64 TACTGTTTCTCCATACCCG‑GTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAG < 1:382310/68‑1 TTTCTCCATACCCGTTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGC < 1:1563817/70‑1 TTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGC < 1:629673/69‑1 TCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAAT > 1:2699946/1‑70 CTCCATACCCGTTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGC < 1:2579063/55‑1 CATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTAC < 1:690012/69‑1 TACCCGTTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGC < 1:1976997/62‑1 TACCCGTTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGC < 1:38815/62‑1 TACCCGTTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAG < 1:2691935/56‑1 TACCCGTTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAG < 1:136833/56‑1 TACCCGTTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTA > 1:1989722/1‑52 ACCCGTTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGC > 1:3598098/1‑71 ACCCGTTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGC > 1:2288111/1‑71 CCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGC > 1:3383504/1‑69 CCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGC > 1:2464021/1‑69 CCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGA > 1:142290/1‑52 CCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTA > 1:3292813/1‑49 CCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTA > 1:2552909/1‑49 CCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTA > 1:1165287/1‑49 TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTA < 1:2920988/60‑1 TTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGT > 1:3157569/1‑71 TTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCA > 1:1680225/1‑65 TTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCA > 1:1285090/1‑65 TTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCA > 1:578022/1‑65 TTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCA > 1:2384776/1‑65 ACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGc < 1:753654/70‑2 TACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGc < 1:1911199/71‑2 TACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGc < 1:3353352/71‑2 TACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCA < 1:3633434/42‑1 TACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCA < 1:541893/42‑1 CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGTTCGTTCTCGCTACCGCAA > 1:1462555/1‑71 CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGca < 1:1645203/70‑3 CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGc > 1:1553153/1‑68 CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGCAA > 1:516489/1‑71 CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGCAA > 1:105119/1‑71 CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGCAA > 1:1095997/1‑71 CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGCAA > 1:846831/1‑71 CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGCAA > 1:941619/1‑71 CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGCAA > 1:1807082/1‑71 CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAAT > 1:2515270/1‑42 CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAAT > 1:2844076/1‑42 CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGC > 1:2222751/1‑39 CAACTCAAGTCTGACATAAATGACCGCTATGAGCA > 1:672277/1‑35 CAACTCAAGTCTGACATAAATGACCGCTATGAGCA > 1:2737800/1‑35 CAACTCAAGTCTGACATAAATGACCGCTATGAGCA > 1:3222232/1‑35 CAACGCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGCAA > 1:3536826/1‑71 ACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGCAA > 1:1583018/1‑69 ACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGCAA > 1:1936212/1‑69 ACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGCAA > 1:764150/1‑69 ACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGCAA > 1:1304740/1‑69 CTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGCAACCA > 1:2397605/1‑71 ||||||||||| AGATTAGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/70130‑70061‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGAAACCA > W3110S.gb/236044‑236112 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |