| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 70061 = | 19 (0.490) | 93 (3.080) +CGCGTACAACT |
18/80 | NT | 71.9% | intergenic (‑13/‑326) | araB/araC | L‑ribulokinase/DNA‑binding transcriptional dual regulator |
| ? | W3110S.gb | 236044 = | 74 (1.910) | intergenic (‑42/‑23) | rnhA/dnaQ | ribonuclease HI, degrades RNA of DNA‑RNA hybrids/DNA polymerase III epsilon subunit | |||||
Only 100 of 244 total aligned reads displayed.
CGGTGAAAATTTCTACCTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGAAACCACC > W3110S.gb/235975‑236114 | ctacctgacgctttttatcgcaactctctactgtttctccatacccgttttttttggacgcgtacaactc < 1:98137‑M2/1‑1 (MQ=255)ctacctgacgctttttatcgcaactctctactgtttctccatacccgttttttttggacgcgtacaactc < 1:257293‑M2/1‑1 (MQ=255)ctacctgacgctttttatcgcaactctctactgtttctccatacccgttttttttggacgcgtacaactc < 1:1083444‑M2/1‑1 (MQ=255)ctacctgacgctttttatcgcaactctctactgtttctccatacccgttttttttggacgcgtacaactc < 1:2660980‑M2/1‑1 (MQ=255)ctacctgacgctttttatcgcaactctctactgtttctccatacccgttttttttggacgcgtacaactc < 1:3339491‑M2/1‑1 (MQ=255)cGGTGAAAATTTCTACCTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGAc > 1:168415/1‑70 (MQ=255)cGGTGAAAATTTCTACCTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGAc > 1:2407302/1‑70 (MQ=255) ctacctgacgctttttatcgaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAg > 1:4636‑M2/68‑71 (MQ=255) acctgacgctttttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGt > 1:296319‑M2/67‑71 (MQ=255) acctgacgctttttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGt > 1:914259‑M2/67‑71 (MQ=255) tgacgctttttatcgcaactctctactgtttctccatacccgttttttttggacgcgtacaactCAAGTCt > 1:3673778‑M2/65‑71 (MQ=255) gacgctttttatcgcaactctctactgtttctccatacccgttttttttggacgcgtacaactCAAGTCt > 1:246563‑M2/64‑70 (MQ=255) gacgctttttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCaa > 1:2103132‑M2/63‑65 (MQ=255) gacgctttttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCaa > 1:1604760‑M2/63‑65 (MQ=255) acgctttttatcgcaactctctactgtttctccatacccgttttttttggacgcgtacaactCAAGTCt < 1:2242121‑M2/7‑1 (MQ=255) aaTTTCTACCTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTg < 1:3192421/70‑1 (MQ=255) ctttttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATa < 1:2971112‑M2/13‑1 (MQ=255) tcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGAcc < 1:1135664‑M2/20‑1 (MQ=255) gcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGc < 1:3258229‑M2/22‑1 (MQ=255) gcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGc < 1:2430724‑M2/22‑1 (MQ=255) gcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGc < 1:2347518‑M2/22‑1 (MQ=255) caactctctactgtttctccatacccgttttttttggacgcgtacaactCAAGTCTGACATa < 1:2485217‑M2/13‑1 (MQ=255) tAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGc < 1:2142205/70‑1 (MQ=255) gCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCCGACATaa < 1:514881/59‑1 (MQ=255) cATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAAt < 1:2786350/60‑1 (MQ=255) cATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAAt < 1:1030895/60‑1 (MQ=255) ctctactgtttctccatacccgtttttttggacgcgtacaactCaa > 1:3571635‑M2/44‑46 (MQ=255) tactgtttctccatacccgttttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAg < 1:1018958‑M2/28‑1 (MQ=255) tactgtttctccatacccgttttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAg < 1:1252160‑M2/28‑1 (MQ=255) tactgtttctccatacccgttttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAg < 1:3197180‑M2/28‑1 (MQ=255) tactgtttctccatacccgttttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAg < 1:1294865‑M2/28‑1 (MQ=255) tctGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTAt > 1:1162470/1‑65 (MQ=255) tactgtttctccatacccgtttttttggccgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCAc > 1:2066024‑M2/41‑71 (MQ=255) tactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTa > 1:2402642‑M2/41‑64 (MQ=255) tactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAg < 1:3484571‑M2/28‑1 (MQ=255) tactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAg < 1:1658330‑M2/28‑1 (MQ=255) tactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAg < 1:1403750‑M2/28‑1 (MQ=255) tactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAg < 1:1408376‑M2/28‑1 (MQ=255) tactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAg < 1:1433196‑M2/28‑1 (MQ=255) tGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCa > 1:990381/1‑68 (MQ=255) tGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCa > 1:1038096/1‑68 (MQ=255) tGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCa > 1:1737018/1‑68 (MQ=255) tttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGc < 1:629673‑M2/34‑1 (MQ=255) aGACTTCCTGTAATTGAATCGAACTGTAAAACGACaa > 1:2991386/1‑37 (MQ=255) aGACTTCCTGTAATTGAATCGAACTGTAAAACGACaa > 1:2743630/1‑37 (MQ=255) tctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAAt > 1:2699946‑M2/34‑70 (MQ=255) gACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAAt < 1:3718510/70‑1 (MQ=255) gACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAAt < 1:648214/70‑1 (MQ=255) aCTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTa < 1:377947/71‑1 (MQ=255) aCTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTa < 1:451089/71‑1 (MQ=255) aCTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTa < 1:269125/71‑1 (MQ=255) aCTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTa < 1:2185793/71‑1 (MQ=255) ttCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTaca > 1:1117588/1‑71 (MQ=255) catacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTac < 1:700442‑M2/40‑1 (MQ=255) tacccgttttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTa > 1:1491559‑M2/29‑52 (MQ=255) tacccgttttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTa > 1:1989722‑M2/29‑52 (MQ=255) tacccgttttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAg < 1:136833‑M2/28‑1 (MQ=255) tacccgttttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGc < 1:1976997‑M2/34‑1 (MQ=255) tacccgttttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCa < 1:1717448‑M2/35‑1 (MQ=255) tGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATa < 1:416407/39‑1 (MQ=255) tGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATa < 1:862531/39‑1 (MQ=255) tGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATa < 1:2031517/39‑1 (MQ=255) tGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAg < 1:1479230/54‑1 (MQ=255) cccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGc > 1:246000‑M2/26‑69 (MQ=255) cccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGc > 1:3383504‑M2/26‑69 (MQ=255) tAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAAt < 1:3443129/61‑1 (MQ=255) ttGAATCGAACTGTAAAACGACAAGTCTGACATaa < 1:3243688/35‑1 (MQ=255) ttGAATCGAACTGTAAAACGACAAGTCTGACATaa < 1:2602042/35‑1 (MQ=255) ttGAATCGAACTGTAAAACGACAAGTCTGACATaa < 1:1420597/35‑1 (MQ=255) tttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCa > 1:578022‑M2/20‑65 (MQ=255) tttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGt > 1:3157569‑M2/20‑71 (MQ=255) gAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCa > 1:3609883/1‑49 (MQ=255) gAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCa > 1:3310981/1‑49 (MQ=255) gAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCa > 1:2845099/1‑49 (MQ=255) gAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCa > 1:793203/1‑49 (MQ=255) gacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTcgc < 1:1539213‑M2/58‑2 (MQ=255) acgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTcgc < 1:753654‑M2/58‑2 (MQ=255) cTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATa > 1:3542478/1‑71 (MQ=255) tacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCa < 1:3633434‑M2/35‑1 (MQ=255) tacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCa < 1:541893‑M2/35‑1 (MQ=255) tacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACcgc < 1:1911199‑M2/64‑2 (MQ=255) tacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACcgc < 1:3353352‑M2/64‑2 (MQ=255) caactCAAGTCTGACATAAATGACCGCTATGAGCa > 1:498026‑M2/6‑35 (MQ=255) caactCAAGTCTGACATAAATGACCGCTATGAGCa > 1:672277‑M2/6‑35 (MQ=255) caactCAAGTCTGACATAAATGACCGCTATGAGCa > 1:2737800‑M2/6‑35 (MQ=255) caactCAAGTCTGACATAAATGACCGCTATGAGCa > 1:3111416‑M2/6‑35 (MQ=255) caactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAAt > 1:2515270‑M2/6‑42 (MQ=255) caactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTAccgca < 1:1645203‑M2/65‑3 (MQ=255) caactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACcgc > 1:1553153‑M2/6‑68 (MQ=255) caactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGcaa > 1:105119‑M2/6‑71 (MQ=255) caactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGcaa > 1:2368636‑M2/6‑71 (MQ=255) caactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGcaa > 1:1807082‑M2/6‑71 (MQ=255) caactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGcaa > 1:941619‑M2/6‑71 (MQ=255) caactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCAAGATCGTTCTCGCTACCGcaa > 1:1216475‑M2/6‑71 (MQ=255) aCGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGAAac > 1:349617/1‑71 (MQ=255) aCGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGAAac > 1:771980/1‑71 (MQ=255) actCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGcaa > 1:1583018‑M2/4‑69 (MQ=255) actCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGcaa > 1:1304740‑M2/4‑69 (MQ=255) actCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGcaa > 1:764150‑M2/4‑69 (MQ=255) cAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGCAaccacc > 1:2214202/1‑71 (MQ=255) | CGGTGAAAATTTCTACCTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGAAACCACC > W3110S.gb/235975‑236114 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |