| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 205097 = | 34 (0.880) | 29 (1.010) +TTATAACATTTTA |
8/76 | NT | 49.5% | intergenic (+8/‑29) | rnhB/dnaE | ribonuclease HII, degrades RNA of DNA‑RNA hybrids/DNA polymerase III alpha subunit |
| ? | W3110S.gb | 4139149 = | 46 (1.190) | coding (2/1023 nt) | frlB | fructoselysine‑6‑P‑deglycase | |||||
ACATCTTCAGATTCCGGTTTACTTAATCTCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/205129‑205097‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATTTTATTTTCTCCAG > W3110S.gb/4139149‑4139164 ||||||||||||| tCATCTTCAGATTCCGGTTTACTTAATCTCGACTTATAACATTTT < 1:2940609/44‑1tCATCTTCAGATTCCGGTTTACTTAATCTCGACTTATAACATTTT < 1:2776569/44‑1 CATCTTCAGATTCCGGTTTACTTAATCTCGACTTAT > 1:1941397/1‑36 CATCTTCAGATACCGGTTTACTTAATCTCGACTTAT > 1:3012647/1‑36 TCTTCAGATTCCGGTTTACTTAATCTCGACTTATAACATTTTAATTTTATTTTCTC < 1:2346885/56‑1 TCTTCAGATTCCGGTTTACTTAATCTCGACTTATAACATTTTAATTTTATTTTCTC < 1:1861976/56‑1 TCTTCAGATTCCGGTTTACTTAATCTCGACTTATAACATTTTAATTTTATT < 1:995086/51‑1 TCTTCAGATTCCGGTTTACTTAATCTCGACTTATAACATTTTAATTTTATT < 1:3287395/51‑1 TCTTCAGATTCCGGTTTACTTAATCTCGACTTATAACA < 1:260339/38‑1 TCTTCAGATTCCGGTTTACTTAATCTCGACTTATAACA < 1:823360/38‑1 TCTTCAGATTCCGGTTTACTTAATCTCGACTTATAACA < 1:2186011/38‑1 TCTTCAGATTCCGGTTTACTTAATCTCGACTTATAACA < 1:1766760/38‑1 TCTTCAGATTCCGGTTTACTTAATCTCGACTTATAACA < 1:1375755/38‑1 TCTTCAGAGTCCGGTTTACTTAATCTCGACTTATAACA < 1:1643627/38‑1 CTTCAGATTCCGGTTTACTTAATCTCGACTTATAACATTTTAATTTTATTTTCTC < 1:2978632/55‑1 TTCAGATTCCGGTTTACTTAATCTCGACTTATAACATTTTAATTTTATTTT > 1:235179/1‑51 TTCAGATTCCGGTTTACTTAATCTCGACTTATAACATTTTAATTTTATTTT > 1:1161804/1‑51 GATTCCGGTTTACTTAATCTCGACTTATAACATTTTAATTTTATTTTCTC < 1:2152982/50‑1 GATTCCGGTTTACTTAATCTCGACTTATAACATTTTAATTTTATTTTCTC < 1:281757/50‑1 ATTCCGGTTTACTTAATCTCGACTTATAACATTTTAATTTTA < 1:2792502/42‑1 TTCCGGTTTACTTAATCTCGACTTATAACATTTTAATTTTATTTTCTCCA > 1:667671/1‑50 TTCCGGTTTACTTAATCTCGACTTATAACATTTTAATTTTATTTTCTCCA > 1:453443/1‑50 TTCCGGTTTACTTAATCTCGACTTATAACATTTTAATTTTATTTTCTCCA > 1:1230333/1‑50 TTCCGGTTTACTTAATCTCGACTTATAACATTTTAATTTTATTTTCTCCA > 1:1225982/1‑50 TTCCGGTTTACTTAATCTCGACTTATAACATTTTAATTTTATTTTCTCCA > 1:292302/1‑50 TTCCGGTTTACTTAATCTCGACTTATAACATTTTAATTTTATTTTCTCCA > 1:2816951/1‑50 TTCCGGTTTACTTAATCTCGACTTATAACATTTTAATTTTATTTTCTCCA > 1:2293758/1‑50 TTCCGGTTTACTTAATCTCGACTTATAACATTTTAATTTTATTTTC > 1:869668/1‑46 TCCGGTTTACTTAATCTCGACTTATAACATTTTAATTTTATTTT > 1:781585/1‑44 GTTTACTTAATCTCGACTTATAACATTTTAATTTTATTTTCTCC < 1:1909293/44‑1 GTTTACTTAATCTCGACTTATAACATTTTAATTTTATTTTCTCC < 1:3365400/44‑1 GTTTACTTAATCTCGACTTATAACATTTTAATTTTATTTTCTCC < 1:3568208/44‑1 GTTTACTTAATCTCGACTTATAACATTTTAATTTTATTTTCTCC < 1:2282416/44‑1 TTTACTTAATCTCGACTTATAACATTTTAATTTTATTTTCTCCAt < 1:1200481/45‑2 TTACTTAATCTCGACTTATAACATTTTAATTTTATTTTCTCCAt < 1:96470/44‑2 TTACTTAATCTCGACTTATAACATTTTAATTTTAT > 1:496808/1‑35 TTACTTAATCTCGACTTATAACATTTTAATTTTAT > 1:1604898/1‑35 ACTTAATCTCGACTTATAACATTTTAATTTTATTTTCTC < 1:1425952/39‑1 ACTTAATCTCGACTTATAACATTTTAATTTTATTTTCTC < 1:1639394/39‑1 ||||||||||||| ACATCTTCAGATTCCGGTTTACTTAATCTCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/205129‑205097‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATTTTATTTTCTCCAG > W3110S.gb/4139149‑4139164 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |