| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 274373 | NA (NA) | 40 (1.030) | 9/102 | NT | 100% | intergenic (‑32/‑176) | insH/mmuP | IS5 transposase and trans‑activator/predicted S‑methylmethionine transporter |
| ? | W3110S.gb | 576000 = | 0 (0.000) | pseudogene (109/1128 nt) | nmpC | DLP12 prophage region; ECK0544:JW5078:b0553; truncated outer membrane porin | |||||
ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/274304‑274373‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTTTGAAC > W3110S.gb/576000‑576068 ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT < 1:2919247/71‑1ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:815910/1‑71ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:790004/1‑71ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:3358706/1‑71ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:3655787/1‑71 TGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGTGACTTGTTCGCACCTTCCTT < 1:1464875/71‑1 TGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:3645906/71‑1 TGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:2927984/71‑1 TGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:2026665/71‑1 TGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:1293845/71‑1 TGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT < 1:1919444/70‑1 TGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:655910/1‑70 TGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:920419/1‑70 TGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:1819445/1‑70 TGATCAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:17647/71‑1 ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG < 1:1398690/71‑1 ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG > 1:1682852/1‑71 ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG > 1:2140074/1‑71 ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG > 1:2309730/1‑71 ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG > 1:2432388/1‑71 ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG > 1:2987059/1‑71 ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG > 1:311046/1‑71 ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG > 1:3304583/1‑71 ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG > 1:498086/1‑71 ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG > 1:812582/1‑71 ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG > 1:876079/1‑71 ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG > 1:1106379/1‑71 ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTA > 1:2537462/1‑70 TGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGT < 1:2136160/71‑1 TGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGT < 1:1851804/71‑1 TGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGT < 1:230181/71‑1 TGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGT < 1:1556668/71‑1 ACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACT < 1:3310559/71‑1 ACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:991536/65‑1 CCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG < 1:816629/66‑1 CCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG < 1:1227227/66‑1 CCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG < 1:1243190/66‑1 CCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG < 1:1471794/66‑1 TTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACT < 1:1305375/65‑1 TTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACT < 1:2423861/65‑1 CTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGC > 1:1216096/1‑71 TGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTAC > 1:613790/1‑59 TGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTAC > 1:2552181/1‑59 TGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGT < 1:3131311/57‑1 TGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT < 1:2368395/53‑1 TGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT < 1:1266321/53‑1 TGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT < 1:3014163/53‑1 GCTCCAGATGAAAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT < 1:1612880/51‑1 CTCCATATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACT < 1:1287040/57‑1 CTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACT < 1:189699/57‑1 CTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACT < 1:3506799/57‑1 CTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACT < 1:1629109/57‑1 CTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACT < 1:3307304/57‑1 CTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACT < 1:1595261/57‑1 CTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACT < 1:1477704/57‑1 TCCAGATGTCAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:2924166/50‑1 TCCAGATGACAAACATTATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:1279986/50‑1 TCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:744189/50‑1 TCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:2357275/50‑1 TCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:3633635/50‑1 CAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGA < 1:3667616/71‑1 CAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGA < 1:658516/71‑1 CAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGA < 1:3498714/71‑1 CAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT < 1:3286413/47‑1 ACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGC < 1:960286/71‑1 ACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGC < 1:579619/71‑1 ACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGC < 1:2717951/71‑1 ACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGC < 1:275308/71‑1 CAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGC < 1:1881439/70‑1 CAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGC < 1:838259/70‑1 CAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAAT > 1:1337298/1‑67 CAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAAT > 1:1961648/1‑67 ATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTT < 1:910435/70‑1 TATCAGGGACTTGTGCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGA < 1:2570590/50‑1 TCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCA > 1:123928/1‑71 TCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCA < 1:1514574/71‑1 TCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTC < 1:2162191/70‑1 TCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCA > 1:3064826/1‑56 TCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGACA > 1:3136727/1‑56 GACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGA < 1:375507/43‑1 GACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGA < 1:2021253/43‑1 GACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGA < 1:3135052/43‑1 GTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAAT > 1:2501386/1‑41 GTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAAT > 1:1027782/1‑41 GTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAA > 1:1420112/1‑40 GTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAA > 1:2839302/1‑40 GTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAA > 1:1215087/1‑40 GTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAA > 1:895055/1‑40 CTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTTTGAAC < 1:1671968/70‑1 CTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTTTGAAC < 1:2723156/70‑1 CTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTTTGAAC < 1:1153540/70‑1 CTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTTTGAAC < 1:1864963/70‑1 ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/274304‑274373‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTTTGAAC > W3110S.gb/576000‑576068 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |