New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | W3110S.gb | = 274373 | NA (NA) | 40 (1.030) | 9/102 | NT | 100% | intergenic (‑32/‑176) | insH/mmuP | IS5 transposase and trans‑activator/predicted S‑methylmethionine transporter |
? | W3110S.gb | 576000 = | 0 (0.000) | pseudogene (109/1128 nt) | nmpC | DLP12 prophage region; ECK0544:JW5078:b0553; truncated outer membrane porin |
ACTTTCCCGTACAGATCCAGCTTGTTACTGTCTTTATTATAAATTTCAGCTGCCTGAGCAGACATCGCCATTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTTTGAAC > W3110S.gb/575930‑576068 | atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:815910‑M2/71‑71 (MQ=255) atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:790004‑M2/71‑71 (MQ=255) atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:3655787‑M2/71‑71 (MQ=255) atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:3358706‑M2/71‑71 (MQ=255) atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct < 1:2919247‑M2/1‑1 (MQ=255) tgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagtgacttgttcgcaccttcctt < 1:1464875‑M2/2‑1 (MQ=255) tgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:2026665‑M2/2‑1 (MQ=255) tgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:3645906‑M2/2‑1 (MQ=255) tgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:1293845‑M2/2‑1 (MQ=255) tgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:2927984‑M2/2‑1 (MQ=255) tgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:920419‑M2/70‑70 (MQ=255) tgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:1819445‑M2/70‑70 (MQ=255) tgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct < 1:1919444‑M2/1‑1 (MQ=255) tgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:655910‑M2/70‑70 (MQ=255) tgatcaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:17647‑M2/2‑1 (MQ=255) atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTa > 1:2537462‑M2/68‑70 (MQ=255) atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg > 1:2987059‑M2/68‑71 (MQ=255) atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg > 1:311046‑M2/68‑71 (MQ=255) atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg > 1:3304583‑M2/68‑71 (MQ=255) atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg > 1:2432388‑M2/68‑71 (MQ=255) atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg > 1:2309730‑M2/68‑71 (MQ=255) atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg > 1:2140074‑M2/68‑71 (MQ=255) atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg > 1:498086‑M2/68‑71 (MQ=255) atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg > 1:812582‑M2/68‑71 (MQ=255) atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg > 1:876079‑M2/68‑71 (MQ=255) atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg > 1:1106379‑M2/68‑71 (MQ=255) atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg < 1:1398690‑M2/4‑1 (MQ=255) atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg > 1:1682852‑M2/68‑71 (MQ=255) tgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGt < 1:1556668‑M2/5‑1 (MQ=255) tgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGt < 1:1851804‑M2/5‑1 (MQ=255) tgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGt < 1:230181‑M2/5‑1 (MQ=255) tgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGt < 1:2136160‑M2/5‑1 (MQ=255) accctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:991536‑M2/2‑1 (MQ=255) accctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACt < 1:3310559‑M2/8‑1 (MQ=255) ccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg < 1:1227227‑M2/4‑1 (MQ=255) ccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg < 1:816629‑M2/4‑1 (MQ=255) ccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg < 1:1471794‑M2/4‑1 (MQ=255) ccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg < 1:1243190‑M2/4‑1 (MQ=255) ttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACt < 1:1305375‑M2/8‑1 (MQ=255) ttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACt < 1:2423861‑M2/8‑1 (MQ=255) ctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGc > 1:1216096‑M2/56‑71 (MQ=255) tggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct < 1:3014163‑M2/1‑1 (MQ=255) tggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct < 1:1266321‑M2/1‑1 (MQ=255) tggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct < 1:2368395‑M2/1‑1 (MQ=255) tggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGt < 1:3131311‑M2/5‑1 (MQ=255) tggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTAc > 1:2552181‑M2/53‑59 (MQ=255) tggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTAc > 1:613790‑M2/53‑59 (MQ=255) gctccagatgaaaaacatgatctcatatcagggacttgttcgcaccttcct < 1:1612880‑M2/1‑1 (MQ=255) ctccatatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACt < 1:1287040‑M2/8‑1 (MQ=255) ctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACt < 1:1477704‑M2/8‑1 (MQ=255) ctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACt < 1:3307304‑M2/8‑1 (MQ=255) ctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACt < 1:189699‑M2/8‑1 (MQ=255) ctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACt < 1:3506799‑M2/8‑1 (MQ=255) ctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACt < 1:1595261‑M2/8‑1 (MQ=255) ctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACt < 1:1629109‑M2/8‑1 (MQ=255) tccagatgtcaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:2924166‑M2/2‑1 (MQ=255) tccagatgacaaacattatctcatatcagggacttgttcgcaccttcctt < 1:1279986‑M2/2‑1 (MQ=255) tccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:2357275‑M2/2‑1 (MQ=255) tccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:744189‑M2/2‑1 (MQ=255) tccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:3633635‑M2/2‑1 (MQ=255) cagatgacaaacatgatctcatatcagggacttgttcgcaccttcct < 1:3286413‑M2/1‑1 (MQ=255) cagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGa < 1:3498714‑M2/25‑1 (MQ=255) cagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGa < 1:658516‑M2/25‑1 (MQ=255) cagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGa < 1:3667616‑M2/25‑1 (MQ=255) acaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGc < 1:275308‑M2/31‑1 (MQ=255) acaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGc < 1:2717951‑M2/31‑1 (MQ=255) acaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGc < 1:960286‑M2/31‑1 (MQ=255) acaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGc < 1:579619‑M2/31‑1 (MQ=255) caaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAAt > 1:1337298‑M2/40‑67 (MQ=255) caaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAAt > 1:1961648‑M2/40‑67 (MQ=255) caaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGc < 1:838259‑M2/31‑1 (MQ=255) caaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGc < 1:1881439‑M2/31‑1 (MQ=255) atatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAAtttt < 1:910435‑M2/44‑1 (MQ=255) tatcagggacttgtgcgcaccttccTTAGTACTGATGCAGCTACAGCAGa < 1:2570590‑M2/25‑1 (MQ=255) tcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCa > 1:3064826‑M2/24‑56 (MQ=255) tcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTc < 1:2162191‑M2/47‑1 (MQ=255) tcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCa > 1:123928‑M2/24‑71 (MQ=255) tcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCa < 1:1514574‑M2/48‑1 (MQ=255) tcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGACa > 1:3136727‑M2/24‑56 (MQ=255) gacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGa < 1:3135052‑M2/25‑1 (MQ=255) gacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGa < 1:2021253‑M2/25‑1 (MQ=255) gacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGa < 1:375507‑M2/25‑1 (MQ=255) gttcgcaccttccTTAGTACTGATGCAGCTACAGCAGaaa > 1:1215087‑M2/14‑40 (MQ=255) gttcgcaccttccTTAGTACTGATGCAGCTACAGCAGaaa > 1:2839302‑M2/14‑40 (MQ=255) gttcgcaccttccTTAGTACTGATGCAGCTACAGCAGaaa > 1:895055‑M2/14‑40 (MQ=255) gttcgcaccttccTTAGTACTGATGCAGCTACAGCAGaaa > 1:1420112‑M2/14‑40 (MQ=255) gttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAAt > 1:2501386‑M2/14‑41 (MQ=255) gttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAAt > 1:1027782‑M2/14‑41 (MQ=255) cTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTTTGAAc < 1:2723156‑M2/69‑1 (MQ=255) cTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTTTGAAc < 1:1153540‑M2/69‑1 (MQ=255) cTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTTTGAAc < 1:1864963‑M2/69‑1 (MQ=255) cTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTTTGAAc < 1:1671968‑M2/69‑1 (MQ=255) | ACTTTCCCGTACAGATCCAGCTTGTTACTGTCTTTATTATAAATTTCAGCTGCCTGAGCAGACATCGCCATTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTTTGAAC > W3110S.gb/575930‑576068 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |