| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 314453 = | 28 (0.720) | 52 (1.400) +TC |
17/98 | NT | 79.5% | coding (873/888 nt) | eaeH | attaching and effacing protein, pathogenesis factor |
| ? | W3110S.gb | 3932930 = | 0 (0.000) | coding (219/1608 nt) | dppA | dipeptide transporter | |||||
TTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/314521‑314453‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCG > W3110S.gb/3932930‑3932998 || TTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGAT < 1:992535/70‑1TTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGAT < 1:733258/70‑1TTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGAT < 1:1270263/70‑1TTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGAT < 1:3155399/70‑1 TGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC < 1:2220879/70‑1 GTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCA < 1:366046/70‑1 GTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCA < 1:137739/70‑1 TCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGT < 1:1391017/71‑1 TCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAG < 1:1051749/70‑1 TCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAG < 1:972071/70‑1 TCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAG < 1:3660397/70‑1 TCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAG < 1:3630103/70‑1 TCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAG < 1:3412939/70‑1 TCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAG < 1:1226438/70‑1 ATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGt < 1:1676282/71‑2 ATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGt < 1:158928/71‑2 TGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGtt < 1:892204/71‑3 TGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGAT < 1:102048/71‑1 TGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGAT < 1:2929920/71‑1 GTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGAT < 1:496117/70‑1 ACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCCCGGGC < 1:2411331/70‑1 ACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCCCGGGC < 1:1156180/70‑1 CTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGC > 1:3232052/1‑71 TTTACTCACTTAGCCGCGTGTCCACTATTGCTTGGTAAGATCAGTG < 1:3495508/46‑1 TTTACTCACTTAGCCGCGTGTCCACTATTGCTTGGTAAGATCAGTG < 1:2906371/46‑1 TTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTCAGATCA < 1:480864/43‑1 TTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTG < 1:2869007/46‑1 TTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCA < 1:113658/43‑1 TTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCA < 1:1690544/43‑1 TTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCA < 1:1962769/43‑1 TTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCA < 1:1994565/43‑1 TTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCA < 1:24923/43‑1 TTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCA < 1:248678/43‑1 TTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCA < 1:2204695/43‑1 TTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCA < 1:1517604/43‑1 TTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC < 1:2271710/42‑1 TACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC < 1:2666396/40‑1 TACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC < 1:3715197/40‑1 ACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAA < 1:1313332/70‑1 CTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGG < 1:2261168/62‑1 CTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGG < 1:3572351/62‑1 CTTAGACGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGG < 1:1192387/62‑1 AGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCG < 1:3195257/69‑1 GCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAA < 1:2331924/70‑1 GCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAA < 1:2387941/70‑1 GCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAA < 1:2565845/70‑1 CGTGTCCACTATTGCTGTGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCG < 1:337490/64‑1 TCCACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGTCGGTAAA < 1:3078761/71‑1 TCCACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAA < 1:130336/71‑1 TCCACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAA > 1:2453339/1‑53 ACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACC < 1:2632098/71‑1 CTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACC < 1:1539051/70‑1 CTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTC < 1:1105816/52‑1 CTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTC < 1:2501207/52‑1 CTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTC < 1:1500736/52‑1 TATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTA > 1:2210769/1‑71 TATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTA > 1:472370/1‑71 TATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGG < 1:2061347/46‑1 ATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTA > 1:3591638/1‑70 ATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTA > 1:1552155/1‑70 ATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTA > 1:3307463/1‑70 ATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTA > 1:3519742/1‑70 ATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTA > 1:3218362/1‑70 ATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTA > 1:441759/1‑70 ATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTA > 1:2861562/1‑70 ATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTA > 1:2656331/1‑70 TTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATA > 1:3549629/1‑71 TTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATA > 1:1350412/1‑71 TTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATA > 1:1376281/1‑71 TTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATA > 1:3231842/1‑71 TTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATA > 1:15708/1‑71 TTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATA > 1:1600637/1‑71 TTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATA > 1:1711104/1‑71 TTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATA > 1:2761941/1‑71 TTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATA > 1:2160670/1‑71 TTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAA > 1:3304765/1‑46 GCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACC > 1:3127741/1‑71 GCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACC > 1:3595598/1‑71 GCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGG > 1:411504/1‑58 GCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGA > 1:227905/1‑55 GGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACC < 1:1539046/61‑1 GTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCA < 1:2587628/71‑1 GTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCA < 1:2791217/71‑1 GTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCA < 1:3584585/71‑1 TAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAA < 1:3133045/56‑1 ATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTC < 1:3150371/37‑1 TCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCG > 1:1236389/1‑71 CAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGA > 1:3386121/1‑43 CAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGA > 1:1764925/1‑43 CAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGA > 1:1722306/1‑43 || TTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/314521‑314453‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCG > W3110S.gb/3932930‑3932998 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |