| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 314453 = | 28 (0.720) | 52 (1.400) +TC |
17/98 | NT | 79.5% | coding (873/888 nt) | eaeH | attaching and effacing protein, pathogenesis factor |
| ? | W3110S.gb | 3932930 = | 0 (0.000) | coding (219/1608 nt) | dppA | dipeptide transporter | |||||
Only 100 of 120 total aligned reads displayed.
TGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAA > W3110S.gb/314387‑314521 | tGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTa > 1:199810/1‑71 (MQ=255)tGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTa > 1:709549/1‑71 (MQ=255) tggaaggtataggttttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTAc < 1:2587628‑M1/6‑1 (MQ=255) tggaaggtataggttttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTAc < 1:3584585‑M1/6‑1 (MQ=255) tggaaggtataggttttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTAc < 1:2791217‑M1/6‑1 (MQ=255) ggtataggttttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGc > 1:3127741‑M1/61‑71 (MQ=255) ggtataggttttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGc > 1:3595598‑M1/61‑71 (MQ=255) tataggttttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCaa > 1:1711104‑M1/59‑71 (MQ=255) tataggttttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCaa > 1:3231842‑M1/59‑71 (MQ=255) tataggttttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCaa > 1:1600637‑M1/59‑71 (MQ=255) tataggttttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCaa > 1:15708‑M1/59‑71 (MQ=255) tataggttttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCaa > 1:1350412‑M1/59‑71 (MQ=255) tataggttttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCaa > 1:1376281‑M1/59‑71 (MQ=255) aTAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCaa < 1:1383047/71‑1 (MQ=255) aTAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCaa < 1:614643/71‑1 (MQ=255) aTAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCaa < 1:1546387/71‑1 (MQ=255) taggttttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAAt > 1:3591638‑M1/57‑70 (MQ=255) taggttttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAAt > 1:1552155‑M1/57‑70 (MQ=255) taggttttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAAt > 1:441759‑M1/57‑70 (MQ=255) taggttttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAAt > 1:2656331‑M1/57‑70 (MQ=255) taggttttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAAt > 1:2861562‑M1/57‑70 (MQ=255) taggttttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAAt > 1:3218362‑M1/57‑70 (MQ=255) taggttttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAAt > 1:3307463‑M1/57‑70 (MQ=255) taggttttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAAt > 1:3519742‑M1/57‑70 (MQ=255) taggttttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATa > 1:2210769‑M1/57‑71 (MQ=255) ggttttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAg < 1:1539051‑M1/16‑1 (MQ=255) ggttttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGt < 1:2632098‑M1/17‑1 (MQ=255) cgcCAGTAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTg < 1:2537913/71‑1 (MQ=255) cgcCAGTAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTg < 1:214842/71‑1 (MQ=255) tttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTa < 1:3133045‑M1/5‑1 (MQ=255) tttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGa < 1:130336‑M1/20‑1 (MQ=255) ccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGc > 1:411504‑M1/48‑58 (MQ=255) aaaGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTg < 1:1341580/65‑1 (MQ=255) aGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACAcgcg < 1:2499036/71‑1 (MQ=255) tcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGc > 1:227905‑M1/45‑55 (MQ=255) ttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGc < 1:2565845‑M1/28‑1 (MQ=255) ttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGc < 1:2331924‑M1/28‑1 (MQ=255) ccGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTa < 1:3407730/71‑1 (MQ=255) cgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCt < 1:3195257‑M1/29‑1 (MQ=255) gacttcccacttttcagcgaggcccgggatcactgat < 1:3150371‑M1/1‑1 (MQ=255) gacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAg < 1:1500736‑M1/16‑1 (MQ=255) gacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAg < 1:1105816‑M1/16‑1 (MQ=255) gacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAg < 1:2501207‑M1/16‑1 (MQ=255) ttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCaa > 1:3304765‑M1/34‑46 (MQ=255) ttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGa > 1:2453339‑M1/34‑53 (MQ=255) ttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGt < 1:1313332‑M1/37‑1 (MQ=255) tttCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaaa > 1:2444368/1‑71 (MQ=255) tttCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCAGCTAAGTGAGTaaa > 1:2381651/1‑71 (MQ=255) cccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATa < 1:2061347‑M1/15‑1 (MQ=255) ttCTGCCGAGGTGACCTATACGCCAGTGCCTCTTa > 1:3501019/1‑35 (MQ=255) ccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGTCTAAg < 1:1192387‑M1/32‑1 (MQ=255) ccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAg < 1:3572351‑M1/32‑1 (MQ=255) gcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtcag > 1:3232052‑M1/21‑71 (MQ=255) gTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGa < 1:382889/40‑1 (MQ=255) gTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtcag < 1:990357/71‑1 (MQ=255) gTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtcag < 1:2464316/71‑1 (MQ=255) tGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCaga < 1:1622157/71‑1 (MQ=255) gACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGaca > 1:2258945/1‑40 (MQ=255) gACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCagag > 1:1521750/1‑71 (MQ=255) gcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGt < 1:2411331‑M1/55‑1 (MQ=255) gcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGt < 1:1156180‑M1/55‑1 (MQ=255) cTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGt > 1:481147/1‑70 (MQ=255) cTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGt > 1:232211/1‑70 (MQ=255) taCGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACt > 1:2629752/1‑71 (MQ=255) taCGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTAAGAGGTGACt < 1:1553631/71‑1 (MQ=255) cGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAg > 1:2415308/1‑42 (MQ=255) atcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTcaca < 1:2929920‑M1/63‑1 (MQ=255) atcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTcaca < 1:102048‑M1/63‑1 (MQ=255) atcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTcac < 1:496117‑M1/62‑1 (MQ=255) aacactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTcaca < 1:892204‑M1/63‑1 (MQ=255) cAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACAt > 1:1128443/1‑71 (MQ=40) cAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACAt > 1:1254054/1‑71 (MQ=40) acactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACAt < 1:1676282‑M1/64‑1 (MQ=255) cactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaaa < 1:2869007‑M1/40‑1 (MQ=255) cactgaTCTTACCAAGCAATAGTGGACACGCGGCTAAGTGAGTaaa < 1:2906371‑M1/40‑1 (MQ=255) cactgaTCTTACCAAGCAATAGTGGACACGCGGCTAAGTGAGTaaa < 1:3495508‑M1/40‑1 (MQ=255) actgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGa < 1:1391017‑M1/66‑1 (MQ=255) ctgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGa < 1:3630103‑M1/66‑1 (MQ=255) ctgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGa < 1:972071‑M1/66‑1 (MQ=255) ctgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGa < 1:3412939‑M1/66‑1 (MQ=255) ctgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGa < 1:1226438‑M1/66‑1 (MQ=255) ctgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGa < 1:1051749‑M1/66‑1 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaaa < 1:24923‑M1/40‑1 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaaa < 1:2204695‑M1/40‑1 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaaa < 1:1517604‑M1/40‑1 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaaa < 1:1994565‑M1/40‑1 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaaa < 1:1690544‑M1/40‑1 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaaa < 1:1962769‑M1/40‑1 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGAc < 1:366046‑M1/67‑1 (MQ=255) tgaTCTGACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaaa < 1:480864‑M1/40‑1 (MQ=255) gaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaaa < 1:2271710‑M1/40‑1 (MQ=255) gaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTa < 1:2666396‑M1/38‑1 (MQ=255) gaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTa < 1:3715197‑M1/38‑1 (MQ=255) gaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACa < 1:2220879‑M1/68‑1 (MQ=255) ccTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCagag > 1:1023093/1‑55 (MQ=33) ccTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCagag > 1:579299/1‑55 (MQ=33) ccTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCagag > 1:2188326/1‑55 (MQ=33) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaa < 1:733258‑M1/69‑1 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaa < 1:1270263‑M1/69‑1 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaa < 1:3155399‑M1/69‑1 (MQ=255) | TGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAA > W3110S.gb/314387‑314521 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |