| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2018583 | 0 (0.000) | 58 (1.560) | 19/98 | NT | 100% | coding (579/687 nt) | fliH | flagellar biosynthesis protein |
| ? | W3110S.gb | = 2521059 | NA (NA) | intergenic (+170/+30) | insL/yfeA | predicted transposase/predicted diguanylate cyclase | |||||
TGCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGCCACTCGCTGG > W3110S.gb/2018513‑2018652 | tcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCAcc < 1:100153‑M1/13‑1 (MQ=255) tgGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgc > 1:3725442‑M1/1‑62 (MQ=255) tgGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgc > 1:2180550‑M1/1‑62 (MQ=255) tgGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgc > 1:205882‑M1/1‑62 (MQ=255) gatgatATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaa < 1:1035242‑M1/71‑12 (MQ=255) gatgatATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaa > 1:869097‑M1/1‑60 (MQ=255) gatgatATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaa < 1:3013025‑M1/71‑12 (MQ=255) gatgatATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaa > 1:2300054‑M1/1‑60 (MQ=255) gatgatATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaa < 1:2172743‑M1/71‑12 (MQ=255) gatgatATGCTCGGCGCTACCTTAAGTTTGCATGGCTCGCGCTTGCGGGGCGATCCCACCataagcgctaa < 1:2429754‑M1/71‑12 (MQ=255) atatGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaactta < 1:2791038‑M1/71‑16 (MQ=255) atatGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaactta < 1:3697361‑M1/71‑16 (MQ=255) tatGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaactt > 1:760480‑M1/1‑55 (MQ=255) tatGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaact > 1:2111188‑M1/1‑55 (MQ=255) ggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGtc > 1:2765564‑M1/35‑71 (MQ=255) aCCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatc > 1:2316881‑M1/1‑42 (MQ=255) aCCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatc > 1:180551‑M1/1‑42 (MQ=255) aCCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatc > 1:1963852‑M1/1‑42 (MQ=255) aCCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatc > 1:1645430‑M1/1‑42 (MQ=255) aCCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATACCACCataagcgctaacttaagggttgaaccatc > 1:502915‑M1/1‑42 (MQ=255) ataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTccgcc < 1:2285843‑M1/43‑1 (MQ=255) taccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTccgcc > 1:1648260‑M1/28‑70 (MQ=255) taccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTccgcc > 1:1647050‑M1/28‑70 (MQ=255) taccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTccgcc > 1:2429205‑M1/28‑70 (MQ=255) cTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatct > 1:2868520‑M1/1‑40 (MQ=255) cTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatct > 1:3489219‑M1/1‑40 (MQ=255) cTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatct > 1:3484956‑M1/1‑40 (MQ=255) ttAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctg > 1:2365693‑M1/1‑39 (MQ=255) ttAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctg > 1:3647399‑M1/1‑39 (MQ=255) accacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTccgcc > 1:361022‑M1/27‑69 (MQ=255) tAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctg > 1:1687228‑M1/1‑38 (MQ=255) aaGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctg > 1:3269475‑M1/1‑37 (MQ=255) aGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaag < 1:319190‑M1/70‑35 (MQ=255) aGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaag < 1:534858‑M1/70‑35 (MQ=255) aGTTTGCATGACTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaag < 1:2391419‑M1/70‑35 (MQ=255) tttGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaag < 1:2967463‑M1/68‑35 (MQ=255) tttGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaag < 1:563299‑M1/68‑35 (MQ=255) tttGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaag < 1:1688596‑M1/68‑35 (MQ=255) tttGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaag < 1:2657997‑M1/68‑35 (MQ=255) tttGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaag < 1:2512485‑M1/68‑35 (MQ=255) tGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgc > 1:985314‑M1/1‑32 (MQ=255) tGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgc > 1:1617821‑M1/1‑32 (MQ=255) gCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgc < 1:1292977‑M1/70‑40 (MQ=255) gCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgc < 1:3631612‑M1/70‑40 (MQ=255) gCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgc < 1:2803817‑M1/70‑40 (MQ=255) gCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgc < 1:2158906‑M1/70‑40 (MQ=255) gCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgc < 1:702378‑M1/70‑40 (MQ=255) gCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgc < 1:712240‑M1/70‑40 (MQ=255) gCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgc < 1:3193182‑M1/70‑40 (MQ=255) gCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgc < 1:1411152‑M1/70‑40 (MQ=255) gCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgc < 1:3101822‑M1/70‑40 (MQ=255) ccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGc < 1:438590‑M1/52‑1 (MQ=255) ccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGc < 1:3710008‑M1/52‑1 (MQ=255) ccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGc < 1:439247‑M1/52‑1 (MQ=255) ccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGc < 1:2888376‑M1/52‑1 (MQ=255) cttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGc > 1:2420299‑M1/18‑69 (MQ=255) tggctggcGCTTGCGGGTCGATCCCACCataagcgctaacttaagggttgaacc < 1:1853942‑M1/54‑27 (MQ=255) tggctggcGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgc < 1:1397448‑M1/67‑40 (MQ=255) tggctggcGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgc < 1:3358267‑M1/67‑40 (MQ=255) gctggcGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgcga > 1:1518645‑M1/1‑26 (MQ=255) gctggcGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgcga > 1:322215‑M1/1‑26 (MQ=255) gctggcGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgcga > 1:1514461‑M1/1‑26 (MQ=255) gctggcGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgcg > 1:3034411‑M1/1‑26 (MQ=255) gctggcGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgcg > 1:2058778‑M1/1‑26 (MQ=255) gctggcGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatatgaagaatgcga > 1:2867868‑M1/1‑26 (MQ=255) cgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGcc > 1:1872493‑M1/8‑71 (MQ=255) cTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgc < 1:3360179‑M1/71‑53 (MQ=255) cttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAg > 1:3544310‑M1/6‑71 (MQ=255) cttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAg > 1:1488164‑M1/6‑71 (MQ=255) cttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAg > 1:850090‑M1/6‑71 (MQ=255) GCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGc > 1:899773‑M1/1‑70 (MQ=255) gATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaaga > 1:2142775‑M1/1‑9 (MQ=255) gATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaaga > 1:2114076‑M1/1‑9 (MQ=255) aTCCCACCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagac < 1:3672680‑M1/71‑64 (MQ=255) aTCCCACCataagcgctaacttaagggttgaaccatctga < 1:1735271‑M1/40‑33 (MQ=255) cccACCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacga > 1:581731‑M1/1‑6 (MQ=255) cccACCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgtta > 1:2090364‑M1/1‑6 (MQ=255) cccACCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcgg > 1:2080855‑M1/1‑6 (MQ=255) cccACCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcgg > 1:3138303‑M1/1‑6 (MQ=255) ccACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGCCACTCGc > 1:1638569/1‑71 (MQ=255) ccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcc > 1:3636534‑M1/1‑2 (MQ=255) ccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcc > 1:584823‑M1/1‑2 (MQ=255) ccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcc > 1:78685‑M1/1‑2 (MQ=255) ccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcc > 1:1290810‑M1/1‑2 (MQ=255) ccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctc > 1:426221‑M1/1‑2 (MQ=255) cataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaa < 1:642519‑M1/61‑61 (MQ=255) cataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaa < 1:327239‑M1/61‑61 (MQ=255) cataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaa < 1:2690465‑M1/61‑61 (MQ=255) cataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaa < 1:2609784‑M1/61‑61 (MQ=255) cataagcgctaacttaagggttgaaccatctgaagaatgc < 1:3317883‑M1/40‑40 (MQ=255) cataagcgctaacttaagggttgaaccatctgaagaatgc < 1:2495665‑M1/40‑40 (MQ=255) | TGCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGCCACTCGCTGG > W3110S.gb/2018513‑2018652 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |