| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2018583 | 0 (0.000) | 58 (1.560) | 19/98 | NT | 100% | coding (579/687 nt) | fliH | flagellar biosynthesis protein |
| ? | W3110S.gb | = 2521059 | NA (NA) | intergenic (+170/+30) | insL/yfeA | predicted transposase/predicted diguanylate cyclase | |||||
GTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCA > W3110S.gb/2520997‑2521120 | gTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAAt > 1:1055374/1‑71 (MQ=34)gTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAAt > 1:12647/1‑71 (MQ=34)gTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAAt > 1:2458115/1‑71 (MQ=34) gAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTa > 1:1690506/1‑70 (MQ=255) aGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACg < 1:2945321/71‑1 (MQ=255) gTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTg < 1:1182798/71‑1 (MQ=255) gTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTg < 1:3183261/71‑1 (MQ=255) cGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTc > 1:2603822/1‑50 (MQ=255) cGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTc > 1:3029686/1‑50 (MQ=255) cGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTc > 1:3345468/1‑50 (MQ=255) gCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTa < 1:3617662/71‑1 (MQ=255) ccATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGtt > 1:370728/2‑70 (MQ=255) cttcAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTg > 1:1656411/1‑63 (MQ=255) tGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGtttttt > 1:739354/1‑48 (MQ=255) tGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATgg > 1:3467096/1‑71 (MQ=255) gTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCt < 1:2147328/64‑1 (MQ=255) gTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCt < 1:451417/64‑1 (MQ=255) gTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCt < 1:3124118/64‑1 (MQ=255) gTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCt < 1:1884070/64‑1 (MQ=255) tCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGc > 1:408044/1‑71 (MQ=255) aaGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTaa > 1:3487810/1‑47 (MQ=255) aaGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTaa > 1:3088714/1‑47 (MQ=255) aGCGCTTATTGGATAATTCCCCGGTTTTTTTACGCCTGTTa < 1:2563593/41‑1 (MQ=255) aGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCa < 1:147069/70‑1 (MQ=255) aGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCa > 1:1752515/1‑70 (MQ=255) | GTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCA > W3110S.gb/2520997‑2521120 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |