| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | = 779686 | 90 (1.180) | 6 (0.090) | 3/90 | NT | 7.2% | coding (1/402 nt) | ycgK | hypothetical protein |
| ? | minE | = 779714 | 73 (1.070) | intergenic (‑28/‑181) | ycgK/ycgL | hypothetical protein/conserved hypothetical protein | |||||
CTTACCCGCAGCAAAGCTCGTGGAGGTTAGCAGTGCAAGCAGCAATACAGCCTTCCTGATGCTCTTGATTTTCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > minE/779612‑779686‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcatCGTACTCATTCTGAACAGGAGACTACCAATGAAAATCAAGAGCATCAGGAAGGCTGTATTGCTGCTTGC < minE/779714‑779646 CTTACCCGCAGCAAAGCTCGTGGAGGTTAGCAGTGCAAGCAGCAATACAGCCTTCCTGATGCTCTTGATTT > 1:3594977/1‑71CTTACCCGCAGCAAAGCTCGTGGAGGTTAGCAGTGCAAGCAGCAATACAGCCTTCCTGATGCTCTTGATTT > 1:4016040/1‑71CTTACCCGCAGCAAAGCTCGTGGAGGTTAGCAGTGCAAGCAGCAATACAGACTTCCTGATGCTCTTGATTT > 1:3914775/1‑71CTTACACGCAGCAAAGCTCGTGGAGGTTAGCAGTGCAAGCAGCAATACAGCCTTCCTGATGCTCTTGATTT > 1:3186124/1‑71 ACCCGCAGCAAAGCTCGTGGAGGTTAGCAGTGCAAGCAGCAATACAGCCTTCCTGATGCTCTTGATTTTC < 1:1201449/70‑1 ACCCGCAGCAAAGCTCGTGGAGGTTAGCAGTGCAAGCAGCAATACAGCCTTCCTGATGCTCTTGATTTTC > 1:1447465/1‑70 ACCCGCAGCAAAGCTCGTGGAGGTTAGCAGTGCAAGCAGCAATACAGCCTTCCTGATGCTCTTGATTTTC < 1:2620667/70‑1 ACCCGCAGCAAAGCTCGTGGAGGTTAGCAGTGCAAGCAGCAATACAGCCTTCCTGATGCTCTTGATTTTC < 1:3815360/70‑1 ACCCGCAGCAAAGCTCGTGGAGGTTAGCAGTGCAAGCAGCAATACAGCCTTCCTGATGCTCTTGATTTT < 1:1379434/69‑1 ACCCGCAGCAAAGCTCGTGGAGGTTAGCAGTGCAAGCAGCAATACAGCCTTCCTGATGCTCTTGATTTT < 1:2381810/69‑1 ACCCGCAGCAAAGCTCGTGGAGGTTAGCAGTGCAAGCAGCAATACAGCCTTCCTGATGCTCTTGATTT < 1:2579258/68‑1 CCCGCAGCAAAGCTCGTGGAGGTTAGCAGTGCAAGCAGCAATACAGCCTTCCTGATGCTCTTGATTTTCAT > 1:1049307/1‑71 TAGCAGTGCAAGCAGCAATACAGCCTTCCTGATGCTCTTGATTTTCA > 1:2136308/1‑47 TAGCAGTGCAAGCAGCAATACAGCCTTCCTGATGCTCTTGATTTTCA > 1:2621916/1‑47 TGCAAGCAGCAATACAGCCTTCCTGATGCTCTTGATTTTCAT < 1:1050452/42‑1 TGCAAGCAGCAATACAGCCTTCCTGATGCTCTTGATTTT < 1:1860944/39‑1 TGCAAGCAGCAATACAGCCTTCCTCATGCTCTTGATTTTCATCGTACTCAT < 1:3765222/51‑1 CAAGCAGCAATACAGCCTTCCTGATGCTCTTGATTTTCATCGTACTCATTC > 1:2244019/1‑51 CAAGCAGCAATACAGCCTTCCTGATGCTCTTGATTTTCATCGTACTCATTC > 1:23644/1‑51 CAAGCAGCAATACAGCCTTCCTGATGCTCTTGATTTTCATCGTACTCATTC > 1:560751/1‑51 CAAGCAGCAATACAGCCTTCCTGATGCTCTTGATTT < 1:1072013/36‑1 CCTTCCTGATGCTCTTGATTTTCATCGTACTCATTCTGAACAGGAGACTACCAA > 1:2443929/1‑54 CCTTCCTGATGCTCTTGATTTTCATCGTACTCATTCTGAACAGGAGACTACCAA > 1:2721139/1‑54 TTCATCGTACTCATTCTGAACAGGAGACTACCAATGAAAATCAAGAGCATCAGG < 1:3382550/54‑1 TTCATCGTACTCATTCTGAACAGGAGACTACCAATGAAAATCAAGAGCATCAGG < 1:3139743/54‑1 TTCATCGTACTCATTCTGAACAGGAGACTACCAATGAAAATCA < 1:630912/43‑1 TCATCGTACTCATTCTGAACAGGAGACTACCAATGAAAATCAAGAGCATCAGGAAGGCTGTATTGCTGCTT > 1:2103247/1‑71 CATCGTACTCATTCTGAACAGGAGACTACCAATGAAAATCAAGAGCATCAGGAAGGCTGTATTGCTGCTTG > 1:3068059/1‑71 CATCGTACTCATTCTGAACAGGAGACTACCAATGAAAATCAAGAGCATCAGGAAGGCTGTATT > 1:3321895/1‑63 CATCGTACTCATTCTGAACAGGAGACTACCAATGAAAATCAAGAGCATCAGGAAGGCTGTATT > 1:2002285/1‑63 CATCGTACTCATTCTGAACAGGAGACTACCAATGAAAATCAAGAGCATCA > 1:1000826/1‑50 ATCGTACTCATTCTGAACAGGAGACTACCAATGAAAATCAAGAGCATCAGGAAGGCTGTATTGCTGCTTGg < 1:1002019/71‑2 ATCGTACTCATTCTGAACAGGAGACTACCAATGAAAATCAAGAGCATCAGGAAGGCTGTATTGCTGCTTG < 1:1619090/70‑1 ATCGTACTCATTCTGAACAGGAGACTACCAATGAAAATCAAGAGCATCAGGAAGGCTGTATTGCTGCTTG < 1:4453238/70‑1 ATCGTACTCATTCTGAACAGGAGACTACCAATGAAAATCAAGAGCATCAGGAAGGCTGTATTGCTGCTTG < 1:4458300/70‑1 ATCGTACTCATTCTGAACAGGAGACTACCAATGAAAATCAAGAGCATCAGGAAGGCTG < 1:1555024/58‑1 ATCGTACTCATTCTGAACAGGAGACTACCAATGAAAATCAAGAGCATCAGGAAGGCTG < 1:4316157/58‑1 TCGTACTCATTCTGAACAGGAGACTACCAATGAAAATCAAGAGCATCAGGAAGGCTGTATTGCTGCTTG < 1:2633985/69‑1 CTTACCCGCAGCAAAGCTCGTGGAGGTTAGCAGTGCAAGCAGCAATACAGCCTTCCTGATGCTCTTGATTTTCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > minE/779612‑779686‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcatCGTACTCATTCTGAACAGGAGACTACCAATGAAAATCAAGAGCATCAGGAAGGCTGTATTGCTGCTTGC < minE/779714‑779646 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |