| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | = 826008 | 54 (0.710) | 28 (0.480) +ACGGCTACATCA |
6/76 | NT | 37.1% | coding (405/1254 nt) | ychP | predicted invasin |
| ? | minE | 1727040 = | 71 (0.930) | coding (1190/3888 nt) | purL | phosphoribosylformyl‑glycineamide synthetase | |||||
Only 100 of 114 total aligned reads displayed.
TGTTGCCGATCCCGCCCGCCAGCATGATCGGTTTGTGATAACCGCGCAGCTCTTCGCCGTTGTGGCTGTTCACTTTTTCTTCATAAGTACGGAAGTAGCCGTTCAGTGCCGGACGACCAAATTCGTTGTTAAACG > minE/1726972‑1727106 | tGTTGCCGATCCCGCCCGCCAGCATGATCGGTTTGTGATAACCGCGCAGCTCTTCGCCGTTGTGGCTGtt > 1:2575806/1‑70 (MQ=255)tGTTGCCGATCCCGCCCGCCAGCATGATCGGTTTGTGATAACCGCGCAGCTCTTCGCCGTTGTGGCTGtt < 1:4380486/70‑1 (MQ=255) ttGCCGATCCCGCCCGCCAGCATGATCGGTTTGTGATAACCGCGCAGCTCTTCGCCGTTGTGGCTGtt > 1:519371/1‑68 (MQ=255) ttGCCGATCCCGCCCGCCAGCATGATCGGTTTGTGATAACCGCGCAGCTCTTCGCCGTTGTGGCTGTTCAc > 1:1117190/1‑71 (MQ=255) ttGCCGATCCCGCCCGCCAGCATGATCGGTTTGTGATAACCGCGCAGCTCTTCGCCGTTGTGGCTGTTCAc < 1:123824/71‑1 (MQ=255) gCCGATCCCGCCCGCCAGCATGATCGGTTTGTGATAACCGCGCAGCTCTTCGCCGTTGTGGCTGTTGACtt > 1:3767156/1‑71 (MQ=255) gCCGATCCCGCCCGCCAGCATGATCGGTTTGTGATAACCGCGCAGCTCTTCGCCGTTGTGGCTGTTCACt < 1:3263102/70‑1 (MQ=255) ccGATCCCGCCCGCCAGCATGATCGGTTTGTGATAACCGCGCAGCTCTTCGCCGTTGTGGCTGTTCACttt < 1:323087/71‑1 (MQ=255) ccGATCCCGCCCGCCAGCATGATCGGTTTGTGATAACCGCGCAGCTCTTCGCCGTTGTGGCTGTTCACttt < 1:2318128/71‑1 (MQ=255) ccGATCCCGCCCGCCAGCATGATCGGTTTGTGATAACCGCGCAGCTCTTCGCCGTTGTGGCTGTTCACttt < 1:1893730/71‑1 (MQ=255) cGATCCCGCCCGCCAGCATGATCGGTTTGTGATAACCGCGCAGCTCTTCGCCGTTGTGGCTGTTCACtttt > 1:3189470/1‑71 (MQ=255) aTCCCGCCCGCCAGCATGATCGGTTTGTGATAACCGCGCAGCTCTTCGCCGTTGTGGCTGTTCACttttt > 1:3806471/1‑70 (MQ=255) aTCCCGCCCGCCAGCATGATCGGTTTGTGATAACCGCGCAGCTCTTCGCCGTTGTGGCTGTTCACttttt < 1:2802533/70‑1 (MQ=255) aTCCCGCCCGCCAGCATGATCGGTTTGTGATAACCGCGCAGCTCTTCGCCGTTGTGGCTGTTCACttttt < 1:3072266/70‑1 (MQ=255) aTCCCGCCCGCCAGCATGATCGGTTTGTGATAACCGCGCAGCTCTTCGCCGTTGTGGCTGTTCACTTTttc > 1:1786410/1‑71 (MQ=255) ccgcccgcCAGCATGATCGGTTTGTGATAACCGCGCAGCTCTTCGCCGTTGTGGCTGTTCACTTTttctt < 1:3423280/70‑1 (MQ=255) ccgcccgcCAGCATGATCGGTTTGTGATAACCGCGCAGCTCTTCGCCGTTGTGGCTGTTCACTTTttctt > 1:4084438/1‑70 (MQ=255) ccgcccgcCAGCATGATCGGTTTGTGATAACCGCGCAGCTCTTCGCCGTTGTGGCTGTTCACTTTttc > 1:3436261/1‑68 (MQ=255) gcccgccAGCATGATCGGTTTGTGATAACCGCGCAGCTCTTCGCCGTTGTGGCTGTTCACTTTTTCTTCAt < 1:3787091/71‑1 (MQ=255) cccgccAGCATGATCGGTTTGTGATAACCGCGCAGCTCTTCGCCGTTGTGGCTGTTCACTTTTTCTTCATa < 1:1556620/71‑1 (MQ=255) gccAGCATGATCGGTTTGTGATAACCGCGCAGCTCTTCGCCGTTGTGGCTGTTCACTTTTTCTTCATAAGt < 1:3673928/71‑1 (MQ=255) gCATGATCGGTTTGTGATAACCGCGCAGCTCTTCGCCGTTGTGGCTGTTCACTTTTTCTTCATAAGTACgg < 1:3881929/71‑1 (MQ=255) gCATGATCGGTTTGTGATAACCGCGCAGCTCTTCGCCGTTGTGGCTGTTCACTTTTTCTTCATAAGTACgg < 1:3435678/71‑1 (MQ=255) cATGATCGGTTTGTGATAACCGCGCAGCTCTTCGCCGTTGTGGCTGTTCACTTTTTCTTCATAAGTACGGa < 1:1897695/71‑1 (MQ=255) gATCGGTTTGTGATAACCGGGCAGCTCTTCGCCGTTGTGGCTGTTCACttt < 1:1463168/51‑1 (MQ=255) gATCGGTTTGTGATAACCGCGCAGCTCTTCGCCGTTGTGGCTGTTCACttt < 1:1208973/51‑1 (MQ=255) aTCGGTTTGTGATAACCGCGCAGCTCTTCGCCGTTGTGGCTGTTCACTTTttcttc > 1:231050/1‑56 (MQ=255) aTCGGTTTGTGATAACCGCGCAGCTCTTCGCCGTTGTGGCTGTTCACTTTttcttc > 1:236523/1‑56 (MQ=255) aTCGGTTTGTGATAACCGCGCAGCTCTTCGCCGTTGTGGCTGTTCACTTTttcttc > 1:3307673/1‑56 (MQ=255) aTCGGTTTGTGATAACCGCGCAGCTCTTCGCCGTTGTGGCTGTTCACTTTTTCTTCATAAg > 1:2488822/1‑61 (MQ=255) aTCGGTTTGTGATAACCGCGCAGCTCTTCGCCGTTGTGGCTGTTCACTTTTTCTTCATAAGTACGGAAg > 1:3079013/1‑69 (MQ=255) tCGGTTTGTGATAACCGCGCAGCTCTTCGCCGTTGTGGCTGTTCACTTTTTCTTCATAAGTACGGaa > 1:1052810/1‑67 (MQ=255) tCGGTTTGTGATAACCGCGCAGCTCTTCGCCGTTGTGGCTGTTCACTTTTTCTTCATAAGTACGGaa > 1:658217/1‑67 (MQ=255) ggTTTGTGATAACCGCGCAGCTCTTCGCCGTTGTGGCTGTTCa > 1:4457657/1‑43 (MQ=255) ggTTTGTGATAACCGCGCAGCTCTTCGCCGTTGTGGCTGTTCACTTTTTCTTCATAAGTACg > 1:4468362/1‑62 (MQ=255) gTTTGTGATAACCGCGCAGCTCTTCGCCGTTGTGGCTGTTCACTTTTTCTTCATAAGTACGGAAGTAGCCg < 1:1303836/71‑1 (MQ=255) gTTTGTGATAACCGCGCAGCTCTTCGCCGTTGTGGCTGTTCACTTTTTCTTCATAAGTACGCAAGTAGCCg < 1:1466652/71‑1 (MQ=255) tttGTGATAACCGCGCAGCTCTTCGCCGTTGTGGCTGTTCACTTTTTCTTCAt < 1:110812/53‑1 (MQ=255) tttGTGATAACCGCGCAGCTCTTCGCCGTTGTGGCTGTTCACTTTTTCTTCAt < 1:3412237/53‑1 (MQ=255) tttGTGATAACCGCGCAGCTCTTCGCCGTTGTGGCTGTTCACTTTTTCTTCATAAGTACgg < 1:3301491/61‑1 (MQ=255) tttGTGATAACCGCGCAGCTCTTCGCCGTTGTGGCTGTTCACTTTTTCTTCATAAGTACGGAAGTAGCCg < 1:2470727/70‑1 (MQ=255) ttGTGATAACCGCGCAGCTCTTCGCCGTTGTGGCTGTTCACTTTTTCTTCATAAGTACGGAAGTAGCCGtt > 1:768428/1‑71 (MQ=255) tgtgATAACCGCGCAGCTCTTCGCCGTTGTGGCTGTTCACTTTTTCTTCATAAGTACGGAAGTAGCCGtt < 1:4408257/70‑1 (MQ=255) tgtgATAACCGCGCAGCTCTTCGCCGTTGTGGCTGTTCACTTTTTCTTCATAAGTACGGAAGTAGCCGtt < 1:4193293/70‑1 (MQ=255) gtgATAACCGCGCAGCTCTTCGCCGTTGTGGCTGTTCACTTTTTCTTCATAAGTACGGAAGTAGCCGTTc < 1:2417450/70‑1 (MQ=255) aTAACCGCGCAGCTCTTCGCCGTTGTGGCTGTTCACTTTttcttc < 1:2662994/45‑1 (MQ=255) aTAACCGCGCAGCTCTTCGCCGTTGTGGCTGTTCACTTTTTCTTCATAAGTACGGAAGTAGc < 1:3285203/62‑1 (MQ=255) aaCCGCGCAGCTCTTCGCCGTTGTGGCTGTTCACTTTTTCTTCATAAGTACGGAAGTAGCCGTTCAGTGcc > 1:1150897/1‑71 (MQ=255) cctttatgacaacttgacggctacatcaTTCACTTTttct < 1:2026257‑M2/12‑1 (MQ=255) cctttatgacaacttgacggctacatcaTTCACTTTTTCTTCa > 1:1207972‑M2/29‑43 (MQ=255) aCCGCGCAGCTCTTCGCCGTTGTGGCTGTTCACTTTTTCTTCATAAg < 1:1391425/47‑1 (MQ=255) aCCGCGCAGCTCTTCGCCGTTGTGGCTGTTCACTTTTTCTTCATAAGTAc > 1:3849134/1‑50 (MQ=255) aCCGCGCAGCTCTTCGCCGTTGTGGCTGTTCACTTTTTCTTCATAAGTACGGAAGTAGCCGTTCAGTGCCg < 1:1919684/71‑1 (MQ=255) aCCGCGCAGCTCTTCGCCGTTGTGGCTGTTCACTTTTTCTTCATAAGTACGGAAGTAGCCGTTCAGTGCCg < 1:4538798/71‑1 (MQ=255) ctttatgacaacttgacggctacatcaTTCACttttt < 1:3951008‑M2/10‑1 (MQ=255) ctttatgacaacttgacggctacatcaTTCACttttt < 1:1381147‑M2/10‑1 (MQ=255) ctttatgacaacttgacggctacatcaTTCACTTTTTCTTCACaa < 1:906768‑M2/18‑1 (MQ=255) ccGCGCAGCTCTTCGCCGTTGTGGCTGTTCACTTTTTCTTCATAAGTACGGa < 1:2358270/52‑1 (MQ=255) ccGCGCAGCTCTTCGCCGTTGTGGCTGTTCACTTTTTCTTCATAAGTACGGAAGTAGCCGtt < 1:1044610/62‑1 (MQ=255) tttattacaacttgacggctacatcaTTCACTTTttctt < 1:4330018‑M2/13‑1 (MQ=255) tttatgacaacttgacggctacatcaTTCActttta > 1:2308695‑M2/27‑35 (MQ=255) tttatgacaacttgacggctacatcaTTCACttttt < 1:3008993‑M2/10‑1 (MQ=255) tttatgacaacttgacggctacatcaTTCACttttt > 1:744520‑M2/27‑36 (MQ=255) tttatgacaacttgacggctacatcaTTCACTTTttc > 1:4652056‑M2/27‑37 (MQ=255) tttatgacaacttgacggctacatcaTTCACTTTTTCTTcac > 1:2625089‑M2/27‑41 (MQ=255) tttatgacaacttgacggctacatcaTTCACTTTTTCTTcac > 1:2245174‑M2/27‑41 (MQ=255) tttatgacaacttgacggctacatcaTTCACTTTTTCTTCa > 1:3174234‑M2/27‑41 (MQ=255) cgcgCAGCTCTTCGCCGTTGTGGCTGTTCACTTTTTCTTCATAAGTa > 1:2362335/1‑47 (MQ=255) ttatgacaacttgacggctacatcaTTCACTTTttctt < 1:4588002‑M2/13‑1 (MQ=255) ttatgacaacttgacggctacatcaTTCACTTTttctt < 1:3473137‑M2/13‑1 (MQ=255) ttatgacaacttgacggctacatcaTTCACTTTTTCTTCACaa > 1:2809519‑M2/26‑43 (MQ=255) ttatgacaacttgacggctacatcaTTCACTTTTTCTTCACaa > 1:189063‑M2/26‑43 (MQ=255) gcgcAGCTCTTCGCGATTGTGGCTGTTCACTTTTTCTTCATAAGTACGGAAGTAGCCGTTCAGTGCCGgac > 1:3296602/1‑71 (MQ=255) tatgacaacttgacggctacatcaTTCACTTTttcttc > 1:1623365‑M2/25‑38 (MQ=255) tatgacaacttgacggctacatcaTTCACTTTTTCTTCAcaac > 1:1670294‑M2/25‑42 (MQ=255) tatgacaacttgacggctacatcaTTCACTTTTTCTTCACaa > 1:673907‑M2/25‑42 (MQ=255) tatgacaacttgacggctacatcaTTCACTTTTTCTTCACaa > 1:1414226‑M2/25‑42 (MQ=255) tatgacaacttgacggctacatcaTTCACTTTTTCTTCACaa > 1:4432406‑M2/25‑42 (MQ=255) cgcAGCTCTTCGCCGTTGTGGCTGTTCACTTTTTCTTCATAAGTACGGAAGTAGCCGTTc < 1:2118164/60‑1 (MQ=255) atgacaacttgacggctacatcaTTCACTTTTTCTTCa > 1:2147996‑M2/24‑38 (MQ=255) atgacaacttgacggctacatcaTTCACTTTTTCTTCa > 1:3334064‑M2/24‑38 (MQ=255) gacaacttgacggctacatcaTTCACTTTTTCTTcac < 1:2573519‑M2/16‑2 (MQ=255) aGCTCTTCGCCGTTGTGGCTGTTCACTTTTTCTTCATAAGTACGGAAGTAGCCGtt < 1:3980097/56‑1 (MQ=255) gCTCTTCGCCGTTGTGGCTGTTCACTTTTTCTTCAt < 1:621743/36‑1 (MQ=255) gCTCTTCGCCGTTGTGGCTGTTCACTTTTTCTTCATAAGTACGGAAGTAGCCGTTCAGTGCCGGACGACCa < 1:3575858/71‑1 (MQ=255) ctctTCGCCGTTGTGGCTGTTCACTTTTTCTTCATAAGTACGGAAGTAGCCGTTCAGTGCCGGACGACCa > 1:4372468/1‑70 (MQ=255) acttgacggctacatcaTTCACTTTTTCTTCAcaac > 1:3573412‑M2/18‑35 (MQ=255) ttCGCCGTTGTGGCTGTTCACTTTTTCTTCATAAGTACGGAAGTAGCCGTTc < 1:573008/52‑1 (MQ=255) cGCCGTTGTGGCTGTTCACTTTTTCTTCATAAGTACGGAAGTAGCCGTTCAGTGCCGGACGACCAAATTCg > 1:4514792/1‑71 (MQ=255) ccGTTGTGGCTGTTCACTTTTTCTTCATAAGTACGGAAGTAGCCGTTCAGTGCCGGACGACCAAATTCgt < 1:28969/70‑1 (MQ=255) ttGTGGCTGTTCACTTTTTCTTCATAAGTACGGAAGTAGCCGTTCAGTGCCGGACGACCAAATTCgttgtt < 1:1390944/71‑1 (MQ=255) gtgGCTGTTCACTTTTTCTTCATAAGTACGGAAGTAGCCGTTCAGTGCCGGACGACCAAATTCGTTGTTa < 1:1823849/70‑1 (MQ=255) gtgGCTGTTCACTTTTTCTTCATAAGTACGGAAGTAGCCGTTCAGTGCCGGACGACCAAATTCGTTGTTa < 1:3520669/70‑1 (MQ=255) ggCTGTTCACTTTTTCTTCATAAGTACGGAAGTAGCCGTTCAGTGCCg < 1:1761870/48‑1 (MQ=255) gCTGTTCACTTTTTCTTCATAAGTACGGAAGTAGCCGTTCAGTGCCGGACGACCAAATTCGTTGTTa < 1:1879975/67‑1 (MQ=255) gCTGTTCACTTTTTCTTCATAAGTACGGAAGTAGCCGTTCAGTGCCGGACGACCAAATTCGTTGTTAAAcg < 1:806384/71‑1 (MQ=255) gTTCACTTTTTCTTCATAAGTACGGAAGTAGCCGTTCa > 1:248021/1‑38 (MQ=255) ttCACTTTTTCTTCATAAGTACGGAAGTAGCCGtt < 1:4424913/35‑1 (MQ=255) ttCACTTTTTCTTCATAAGTACGGAAGTAGCCGTTCAGTGCCgg < 1:3799194/44‑1 (MQ=255) ttCACTTTTTCTTCATAAGTACGGAAGTAGCCGTTCAGTGCCgg < 1:3942539/44‑1 (MQ=255) | TGTTGCCGATCCCGCCCGCCAGCATGATCGGTTTGTGATAACCGCGCAGCTCTTCGCCGTTGTGGCTGTTCACTTTTTCTTCATAAGTACGGAAGTAGCCGTTCAGTGCCGGACGACCAAATTCGTTGTTAAACG > minE/1726972‑1727106 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |