Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	2543987	2544012	26	26 [0]	[0] 54	rfaL	O‑antigen ligase

CGCGCAACTATTTAATAAAAATAAAAAAGGATGATTTTTCTTAGTATAAAGAATCGCAACGCCACTAACTA  >  minE/2543916‑2543986                                                                       | cgcgCAACTATTTAATAAAAATAAAAAAGGATGGTTTTTCTTAGTATAAAGAATCGCAACGCCactaacta  <  1:248124/71‑1 (MQ=255) cgcgCAACTATTTAATAAAAATAAAAAAGGATGATTTTTCTTAGTATAAAGAATCGCAACGCCactaacta  <  1:460608/71‑1 (MQ=255) cgcgCAACTATTTAATAAAAATAAAAAAGGATGATTTTTCTTAGTATAAAGAATCGCAACGCCactaacta  <  1:76338/71‑1 (MQ=255) cgcgCAACTATTTAATAAAAATAAAAAAGGATGATTTTTCTTAGTATAAAGAATCGCAACGCCactaacta  <  1:652598/71‑1 (MQ=255) cgcgCAACTATTTAATAAAAATAAAAAAGGATGATTTTTCTTAGTATAAAGAATCGCAACGCCactaacta  <  1:605853/71‑1 (MQ=255) cgcgCAACTATTTAATAAAAATAAAAAAGGATGATTTTTCTTAGTATAAAGAATCGCAACGCCactaacta  <  1:567063/71‑1 (MQ=255) cgcgCAACTATTTAATAAAAATAAAAAAGGATGATTTTTCTTAGTATAAAGAATCGCAACGCCactaacta  <  1:546408/71‑1 (MQ=255) cgcgCAACTATTTAATAAAAATAAAAAAGGATGATTTTTCTTAGTATAAAGAATCGCAACGCCactaacta  <  1:53736/71‑1 (MQ=255) cgcgCAACTATTTAATAAAAATAAAAAAGGATGATTTTTCTTAGTATAAAGAATCGCAACGCCactaacta  <  1:532678/71‑1 (MQ=255) cgcgCAACTATTTAATAAAAATAAAAAAGGATGATTTTTCTTAGTATAAAGAATCGCAACGCCactaacta  <  1:529492/71‑1 (MQ=255) cgcgCAACTATTTAATAAAAATAAAAAAGGATGATTTTTCTTAGTATAAAGAATCGCAACGCCactaacta  <  1:501867/71‑1 (MQ=255) cgcgCAACTATTTAATAAAAATAAAAAAGGATGATTTTTCTTAGTATAAAGAATCGCAACGCCactaacta  <  1:476145/71‑1 (MQ=255) cgcgCAACTATTTAATAAAAATAAAAAAGGATGATTTTTCTTAGTATAAAGAATCGCAACGCCactaacta  <  1:136727/71‑1 (MQ=255) cgcgCAACTATTTAATAAAAATAAAAAAGGATGATTTTTCTTAGTATAAAGAATCGCAACGCCactaacta  <  1:436928/71‑1 (MQ=255) cgcgCAACTATTTAATAAAAATAAAAAAGGATGATTTTTCTTAGTATAAAGAATCGCAACGCCactaacta  <  1:431675/71‑1 (MQ=255) cgcgCAACTATTTAATAAAAATAAAAAAGGATGATTTTTCTTAGTATAAAGAATCGCAACGCCactaacta  <  1:421137/71‑1 (MQ=255) cgcgCAACTATTTAATAAAAATAAAAAAGGATGATTTTTCTTAGTATAAAGAATCGCAACGCCactaacta  <  1:393052/71‑1 (MQ=255) cgcgCAACTATTTAATAAAAATAAAAAAGGATGATTTTTCTTAGTATAAAGAATCGCAACGCCactaacta  <  1:383110/71‑1 (MQ=255) cgcgCAACTATTTAATAAAAATAAAAAAGGATGATTTTTCTTAGTATAAAGAATCGCAACGCCactaacta  <  1:316044/71‑1 (MQ=255) cgcgCAACTATTTAATAAAAATAAAAAAGGATGATTTTTCTTAGTATAAAGAATCGCAACGCCactaacta  <  1:2554/71‑1 (MQ=255) cgcgCAACTATTTAATAAAAATAAAAAAGGATGATTTTTCTTAGTATAAAGAATCGCAACGCCactaacta  <  1:210055/71‑1 (MQ=255) cgcgCAACTATTTAATAAAAATAAAAAAGGATGATTTTTCTTAGTATAAAGAATCGCAACGCCactaacta  <  1:208432/71‑1 (MQ=255) cgcgCAACTATTTAATAAAAATAAAAAAGGATGATTTTTCTTAGTATAAAGAATCGCAACGCCactaacta  <  1:140023/71‑1 (MQ=255) cgcgCAACTATTTAATAAAAATAAAAAAGGATGATTTTTCTTAGTATAAAGAATCGCAACGCCactaacta  <  1:1393/71‑1 (MQ=255)   cgcAACTATTTAATAAAAATAAAAAAGGATGATTTTTCTTAGTATAAAGAATCGCAACGCCactaacta  <  1:626054/69‑1 (MQ=255)              aataaaaataaaAAAGGATGATTTTTCTTAGTATAAAGAATCGCAACGCCactaacta  <  1:56169/58‑1 (MQ=255)                                                                       | CGCGCAACTATTTAATAAAAATAAAAAAGGATGATTTTTCTTAGTATAAAGAATCGCAACGCCACTAACTA  >  minE/2543916‑2543986

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑