Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	2543656	2543667	12	46 [0]	[0] 20	rfaL	O‑antigen ligase

TTCAGCGCGTGACTCTGCTGATCTAAATGAAAAAGGTGACTTTATGAATATATTTAAACCAATTTCGTAC  >  minE/2543586‑2543655                                                                      | ttCAGCGCGTGAGTCTGCTGATCTTAATGAAAAAGGTGACTTTATGAATATATTTAAACCAATTTCGTAc  <  1:532856/70‑1 (MQ=255)  tCAGCGCGTGACTCTGCTGATCTAACTGAAAAATGTGACTTTATGAATATATTTAAACCAATTTCGTAc  <  1:508225/69‑1 (MQ=255)  tCAGCGCGTGACTCTGCTGATCTAAATGAAAAAGGTGACTTTATGAATATATTTAAACCAATTTCGTAc  <  1:239670/69‑1 (MQ=255)  tCAGCGCGTGACTCTGCTGATCTAAATGAAAAAGGTGACTTTATGAATATATTTAAACCAATTTCGTAc  <  1:245010/69‑1 (MQ=255)  tCAGCGCGTGACTCTGCTGATCTAAATGAAAAAGGTGACTTTATGAATATATTTAAACCAATTTCGTAc  <  1:1002128/69‑1 (MQ=255)  tCAGCGCGTGACTCTGCTGATCTAAATGAAAAAGGTGACTTTATGAATATATTTAAACCAATTTCGTAc  <  1:254635/69‑1 (MQ=255)  tCAGCGCGTGACTCTGCTGATCTAAATGAAAAAGGTGACTTTATGAATATATTTAAACCAATTTCGTAc  <  1:260925/69‑1 (MQ=255)  tCAGCGCGTGACTCTGCTGATCTAAATGAAAAAGGTGACTTTATGAATATATTTAAACCAATTTCGTAc  <  1:31952/69‑1 (MQ=255)  tCAGCGCGTGACTCTGCTGATCTAAATGAAAAAGGTGACTTTATGAATATATTTAAACCAATTTCGTAc  <  1:367530/69‑1 (MQ=255)  tCAGCGCGTGACTCTGCTGATCTAAATGAAAAAGGTGACTTTATGAATATATTTAAACCAATTTCGTAc  <  1:369756/69‑1 (MQ=255)  tCAGCGCGTGACTCTGCTGATCTAAATGAAAAAGGTGACTTTATGAATATATTTAAACCAATTTCGTAc  <  1:377362/69‑1 (MQ=255)  tCAGCGCGTGACTCTGCTGATCTAAATGAAAAAGGTGACTTTATGAATATATTTAAACCAATTTCGTAc  <  1:379905/69‑1 (MQ=255)  tCAGCGCGTGACTCTGCTGATCTAAATGAAAAAGGTGACTTTATGAATATATTTAAACCAATTTCGTAc  <  1:572408/69‑1 (MQ=255)  tCAGCGCGTGACTCTGCTGATCTAAATGAAAAAGGTGACTTTATGAATATATTTAAACCAATTTCGTAc  <  1:577184/69‑1 (MQ=255)  tCAGCGCGTGACTCTGCTGATCTAAATGAAAAAGGTGACTTTATGAATATATTTAAACCAATTTCGTAc  <  1:578740/69‑1 (MQ=255)  tCAGCGCGTGACTCTGCTGATCTAAATGAAAAAGGTGACTTTATGAATATATTTAAACCAATTTCGTAc  <  1:593865/69‑1 (MQ=255)  tCAGCGCGTGACTCTGCTGATCTAAATGAAAAAGGTGACTTTATGAATATATTTAAACCAATTTCGTAc  <  1:618921/69‑1 (MQ=255)  tCAGCGCGTGACTCTGCTGATCTAAATGAAAAAGGTGACTTTATGAATATATTTAAACCAATTTCGTAc  <  1:67312/69‑1 (MQ=255)  tCAGCGCGTGACTCTGCTGATCTAAATGAAAAAGGTGACTTTATGAATATATTTAAACCAATTTCGTAc  <  1:797304/69‑1 (MQ=255)  tCAGCGCGTGACTCTGCTGATCTAAATGAAAAAGGTGACTTTATGAATATATTTAAACCAATTTCGTAc  <  1:938643/69‑1 (MQ=255)  tCAGCGCGTGACTCTGCTGATCTAAATGAAAAAGGTGACTTTATGAATATATTTAAACCAATTTCGTAc  <  1:947920/69‑1 (MQ=255)  tCAGCGCGTGACTCTGCTGATCTAAATGAAAAAGGTGACTTTATGAATATATTTAAACCAATTTCGTAc  <  1:1255381/69‑1 (MQ=255)  tCAGCGCGTGACTCTGCTGATCTAAATGAAAAAGGTGACTTTATGAATATATTTAAACCAATTTCGTAc  <  1:1026759/69‑1 (MQ=255)  tCAGCGCGTGACTCTGCTGATCTAAATGAAAAAGGTGACTTTATGAATATATTTAAACCAATTTCGTAc  <  1:1029720/69‑1 (MQ=255)  tCAGCGCGTGACTCTGCTGATCTAAATGAAAAAGGTGACTTTATGAATATATTTAAACCAATTTCGTAc  <  1:1040800/69‑1 (MQ=255)  tCAGCGCGTGACTCTGCTGATCTAAATGAAAAAGGTGACTTTATGAATATATTTAAACCAATTTCGTAc  <  1:1053078/69‑1 (MQ=255)  tCAGCGCGTGACTCTGCTGATCTAAATGAAAAAGGTGACTTTATGAATATATTTAAACCAATTTCGTAc  <  1:1065444/69‑1 (MQ=255)  tCAGCGCGTGACTCTGCTGATCTAAATGAAAAAGGTGACTTTATGAATATATTTAAACCAATTTCGTAc  <  1:1081591/69‑1 (MQ=255)  tCAGCGCGTGACTCTGCTGATCTAAATGAAAAAGGTGACTTTATGAATATATTTAAACCAATTTCGTAc  <  1:1097192/69‑1 (MQ=255)  tCAGCGCGTGACTCTGCTGATCTAAATGAAAAAGGTGACTTTATGAATATATTTAAACCAATTTCGTAc  <  1:1231827/69‑1 (MQ=255)  tCAGCGCGTGACTCTGCTGATCTAAATGAAAAAGGTGACTTTATGAATATATTTAAACCAATTTCGTAc  <  1:1287261/69‑1 (MQ=255)  tCAGCGCGTGACTCTGCTGATCTAAATGAAAAAGGTGACTTTATGAATATATTTAAACCAATTTCGTAc  <  1:1305548/69‑1 (MQ=255)  tCAGCGCGTGACTCTGCTGATCTAAATGAAAAAGGTGACTTTATGAATATATTTAAACCAATTTCGTAc  <  1:1318828/69‑1 (MQ=255)  tCAGCGCGTGACTCTGCTGATCTAAATGAAAAAGGTGACTTTATGAATATATTTAAACCAATTTCGTAc  <  1:139817/69‑1 (MQ=255)  tCAGCGCGTGACTCTGCTGATCTAAATGAAAAAGGTGACTTTATGAATATATTTAAACCAATTTCGTAc  <  1:1468709/69‑1 (MQ=255)  tCAGCGCGTGACTCTGCTGATCTAAATGAAAAAGGTGACTTTATGAATATATTTAAACCAATTTCGTAc  <  1:1514045/69‑1 (MQ=255)  tCAGCGCGTGACTCTGCTGATCTAAATGAAAAAGGTGACTTTATGAATATATTTAAACCAATTTCGTAc  <  1:1528220/69‑1 (MQ=255)  tCAGCGCGTGACTCTGCTGATCTAAATGAAAAAGGTGACTTTATGAATATATTTAAACCAATTTCGTAc  <  1:217512/69‑1 (MQ=255)  tCAGCGCGTGACTCTGCTGATCTAAATGAAAAAGGTGACTTTATGAATACATTTAAACCAATTTCGTAc  <  1:857005/69‑1 (MQ=255)   cAGCGCGTGACTCTGCTGATCTAAATGAAAAAGGTGACTTTATGAATATATTTAAACCAATTTCGTAc  <  1:1330403/68‑1 (MQ=255)   cAGCGCGTGACTCTGCTGATCTAAATGAAAAAGGTGACTTTATGAATATATTTAAACCAATTTCGTAc  <  1:1101526/68‑1 (MQ=255)   cAGCGCGTGACTCTGCTGATCTAAATGAAAAAGGTGACTTTATGAATATATTTAAACCAATTTCGTAc  <  1:642457/68‑1 (MQ=255)   cAGCGCGTGACTCTGCTGATCTAAATGAAAAAGGTGACTTTATGAATATATTTAAACCAATTTCGTAc  <  1:687994/68‑1 (MQ=255)   cAGCGCGTGACTCTGCTGATCTAAATGAAAAAGGTGACTTTATGAATATATTTAAACCAATTTCGTAc  <  1:1554425/68‑1 (MQ=255)   cAGCGCGTGACTCTGCTGATCTAAAAGAAAAAGGTGACTTTATGAATATATTTAAACCAATTTCGTAc  <  1:238506/68‑1 (MQ=255)                              aaaaaGGTGACTTTATGAATATATTTAAACCAATTTCGTAc  <  1:312719/41‑1 (MQ=255)                                                                      | TTCAGCGCGTGACTCTGCTGATCTAAATGAAAAAGGTGACTTTATGAATATATTTAAACCAATTTCGTAC  >  minE/2543586‑2543655

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑