Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	2342837	2342877	41	35 [0]	[0] 36	glnL	sensory kinase in two‑component regulatory system with GlnG

ATATACCAAAGTGATTATCGAACAGGCGGACCGGCTGCGAAATCTGGTCGACCGTCTGTTGGGGCC  >  minE/2342771‑2342836                                                                  | atatACCAAAGTGATTATCGAACAGGCGGACCGGCTGCGAAATCTGGTCGACCGTCTGTTGGGGcc  <  1:499424/66‑1 (MQ=255) atatACCAAAGTGATTATCGAACAGGCGGACCGGCTGCGAAATCTGGTCGACCGTCTGTTGGGGcc  <  1:1048080/66‑1 (MQ=255) atatACCAAAGTGATTATCGAACAGGCGGACCGGCTGCGAAATCTGGTCGACCGTCTGTTGGGGcc  <  1:1916524/66‑1 (MQ=255) atatACCAAAGTGATTATCGAACAGGCGGACCGGCTGCGAAATCTGGTCGACCGTCTGTTGGGGcc  <  1:1966376/66‑1 (MQ=255) atatACCAAAGTGATTATCGAACAGGCGGACCGGCTGCGAAATCTGGTCGACCGTCTGTTGGGGcc  <  1:1967674/66‑1 (MQ=255) atatACCAAAGTGATTATCGAACAGGCGGACCGGCTGCGAAATCTGGTCGACCGTCTGTTGGGGcc  <  1:2009039/66‑1 (MQ=255) atatACCAAAGTGATTATCGAACAGGCGGACCGGCTGCGAAATCTGGTCGACCGTCTGTTGGGGcc  <  1:2059287/66‑1 (MQ=255) atatACCAAAGTGATTATCGAACAGGCGGACCGGCTGCGAAATCTGGTCGACCGTCTGTTGGGGcc  <  1:240060/66‑1 (MQ=255) atatACCAAAGTGATTATCGAACAGGCGGACCGGCTGCGAAATCTGGTCGACCGTCTGTTGGGGcc  <  1:244834/66‑1 (MQ=255) atatACCAAAGTGATTATCGAACAGGCGGACCGGCTGCGAAATCTGGTCGACCGTCTGTTGGGGcc  <  1:188885/66‑1 (MQ=255) atatACCAAAGTGATTATCGAACAGGCGGACCGGCTGCGAAATCTGGTCGACCGTCTGTTGGGGcc  <  1:677745/66‑1 (MQ=255) atatACCAAAGTGATTATCGAACAGGCGGACCGGCTGCGAAATCTGGTCGACCGTCTGTTGGGGcc  <  1:725740/66‑1 (MQ=255) atatACCAAAGTGATTATCGAACAGGCGGACCGGCTGCGAAATCTGGTCGACCGTCTGTTGGGGcc  <  1:769985/66‑1 (MQ=255) atatACCAAAGTGATTATCGAACAGGCGGACCGGCTGCGAAATCTGGTCGACCGTCTGTTGGGGcc  <  1:818699/66‑1 (MQ=255) atatACCAAAGTGATTATCGAACAGGCGGACCGGCTGCGAAATCTGGTCGACCGTCTGTTGGGGcc  <  1:829378/66‑1 (MQ=255) atatACCAAAGTGATTATCGAACAGGCGGACCGGCTGCGAAATCTGGTCGACCGTCTGTTGGGGcc  <  1:844824/66‑1 (MQ=255) atatACCAAAGTGATTATCGAACAGGCGGACCGGCTGCGAAATCTGGTCGACCGTCTGTTGGGGcc  <  1:960610/66‑1 (MQ=255) atatACCAAAGTGATTATCGAACAGGCGGACCGGCTGCGAAATCTGGTCGACCGTCTGTTGGGGcc  <  1:184732/66‑1 (MQ=255) atatACCAAAGTGATTATCGAACAGGCGGACCGGCTGCGAAATCTGGTCGACCGTCTGTTGGGGcc  <  1:1069477/66‑1 (MQ=255) atatACCAAAGTGATTATCGAACAGGCGGACCGGCTGCGAAATCTGGTCGACCGTCTGTTGGGGcc  <  1:1093538/66‑1 (MQ=255) atatACCAAAGTGATTATCGAACAGGCGGACCGGCTGCGAAATCTGGTCGACCGTCTGTTGGGGcc  <  1:1102631/66‑1 (MQ=255) atatACCAAAGTGATTATCGAACAGGCGGACCGGCTGCGAAATCTGGTCGACCGTCTGTTGGGGcc  <  1:1122938/66‑1 (MQ=255) atatACCAAAGTGATTATCGAACAGGCGGACCGGCTGCGAAATCTGGTCGACCGTCTGTTGGGGcc  <  1:12525/66‑1 (MQ=255) atatACCAAAGTGATTATCGAACAGGCGGACCGGCTGCGAAATCTGGTCGACCGTCTGTTGGGGcc  <  1:1281014/66‑1 (MQ=255) atatACCAAAGTGATTATCGAACAGGCGGACCGGCTGCGAAATCTGGTCGACCGTCTGTTGGGGcc  <  1:1306713/66‑1 (MQ=255) atatACCAAAGTGATTATCGAACAGGCGGACCGGCTGCGAAATCTGGTCGACCGTCTGTTGGGGcc  <  1:13192/66‑1 (MQ=255) atatACCAAAGTGATTATCGAACAGGCGGACCGGCTGCGAAATCTGGTCGACCGTCTGTTGGGGcc  <  1:134877/66‑1 (MQ=255) atatACCAAAGTGATTATCGAACAGGCGGACCGGCTGCGAAATCTGGTCGACCGTCTGTTGGGGcc  <  1:1596885/66‑1 (MQ=255) atatACCAAAGTGATTATCGAACAGGCGGACCGGCTGCGAAATCTGGTCGACCGTCTGTTGGGGcc  <  1:1604909/66‑1 (MQ=255) atatACCAAAGTGATTATCGAACAGGCGGACCGGCTGCGAAATCTGGTCGACCGTCTGTTGGGGcc  <  1:1763570/66‑1 (MQ=255) atatACCAAAGTGATTATCGAACAGGCGGACCGGCTGCGAAATCTGGTCGACCGTCTGTTGGGGcc  <  1:1763994/66‑1 (MQ=255) atatACCAAAGTGATTATCGAACAGGCGGACCGGCTGCGAAATCTGGTCGACCGTCTGTTGGGGcc  <  1:1806698/66‑1 (MQ=255) atatACCAAAGTGATTATCGAACAGGCGGACCGGCTGCGAAATCTGGTCGACCGTCTGTTGGGGcc  <  1:1855859/66‑1 (MQ=255)               ttATCGAACAGGCGGACCGGCTGCGAAATCTGGTCGACCGTCTGTTGGGGcc  <  1:436724/52‑1 (MQ=255)                              aCCGGCTGCGAAATCTGGTCGACCGTCTGTTGGGGcc  <  1:1919368/37‑1 (MQ=255)                                                                  | ATATACCAAAGTGATTATCGAACAGGCGGACCGGCTGCGAAATCTGGTCGACCGTCTGTTGGGGCC  >  minE/2342771‑2342836

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑