Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	2543998	2544002	5	10 [0]	[0] 45	rfaL	O‑antigen ligase

AAAAATAAAAAAGGATGATTTTTCTTAGTATAAAGAATCGCAACGCCACTAACTATCCCTATTAGC  >  minE/2543932‑2543997                                                                  | aaaaataaaaaAGGATGATTTTTCTTAGTATAAAGAATCGCAACGCCACTAACTATCCCTATTAGc  <  1:1343947/66‑1 (MQ=255) aaaaataaaaaAGGATGATTTTTCTTAGTATAAAGAATCGCAACGCCACTAACTATCCCTATTAGc  <  1:1628043/66‑1 (MQ=255) aaaaataaaaaAGGATGATTTTTCTTAGTATAAAGAATCGCAACGCCACTAACTATCCCTATTAGc  <  1:166433/66‑1 (MQ=255) aaaaataaaaaAGGATGATTTTTCTTAGTATAAAGAATCGCAACGCCACTAACTATCCCTATTAGc  <  1:1784414/66‑1 (MQ=255) aaaaataaaaaAGGATGATTTTTCTTAGTATAAAGAATCGCAACGCCACTAACTATCCCTATTAGc  <  1:57102/66‑1 (MQ=255) aaaaataaaaaAGGATGATTTTTCTTAGTATAAAGAATCGCAACGCCACTAACTATCCCTATTAGc  <  1:63992/66‑1 (MQ=255) aaaaataaaaaAGGATGATTTTTCTTAGTATAAAGAATCGCAACGCCACTAACTATCCCTATTAGc  <  1:816624/66‑1 (MQ=255) aaaaataaaaaAGGATGATTTTTCTTAGTATAAAGAATCGCAACGCCACTAACTATCCCTATTAGc  <  1:848706/66‑1 (MQ=255) aaaaataaaaaAGGATGATTTTTCTTAGTATAAAGAATCGCAACGCCACTAACTATCCCTATTAGc  <  1:960988/66‑1 (MQ=255) aaaaataaaaaAGGATGATTTTTCTTAGTATAAAGAATCGCAACGCCACTAACTATCCCTATTAGc  <  1:977638/66‑1 (MQ=255)                                                                  | AAAAATAAAAAAGGATGATTTTTCTTAGTATAAAGAATCGCAACGCCACTAACTATCCCTATTAGC  >  minE/2543932‑2543997

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑