Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	1206689	1206693	5	12 [0]	[0] 24	manX	fused mannose‑specific PTS enzyme IIAB components

TTACCAACCCAACAGATGTAGAGCGTCTCGTTGAAGGCGGCGTGAAAATCACCTCTGTTAACGTCGG  >  minE/1206694‑1206760 |                                                                   ttACCAACCCAACAGATGTAGAGCGTCTCGTTGAAGGCGGCGTGAAAGTCACCTCTGTTAACGTCgg  >  1:909314/1‑67 (MQ=255) ttACCAACCCAACAGATGTAGAGCGTCTCGTTGAAGGCGGCGTGAAAATCACct               >  1:911155/1‑54 (MQ=255) ttACCAACCCAACAGATGTAGAGCGTCTCGTTGAAGGCGGCGTGAAAATCACCTCTGTTAACGTCgg  >  1:2126095/1‑67 (MQ=255) ttACCAACCCAACAGATGTAGAGCGTCTCGTTGAAGGCGGCGTGAAAATCACCTCTGTTAACGTCgg  >  1:996602/1‑67 (MQ=255) ttACCAACCCAACAGATGTAGAGCGTCTCGTTGAAGGCGGCGTGAAAATCACCTCTGTTAACGTCgg  >  1:806181/1‑67 (MQ=255) ttACCAACCCAACAGATGTAGAGCGTCTCGTTGAAGGCGGCGTGAAAATCACCTCTGTTAACGTCgg  >  1:747608/1‑67 (MQ=255) ttACCAACCCAACAGATGTAGAGCGTCTCGTTGAAGGCGGCGTGAAAATCACCTCTGTTAACGTCgg  >  1:67711/1‑67 (MQ=255) ttACCAACCCAACAGATGTAGAGCGTCTCGTTGAAGGCGGCGTGAAAATCACCTCTGTTAACGTCgg  >  1:582123/1‑67 (MQ=255) ttACCAACCCAACAGATGTAGAGCGTCTCGTTGAAGGCGGCGTGAAAATCACCTCTGTTAACGTCgg  >  1:414020/1‑67 (MQ=255) ttACCAACCCAACAGATGTAGAGCGTCTCGTTGAAGGCGGCGTGAAAATCACCTCTGTTAACGTCgg  >  1:2128146/1‑67 (MQ=255) ttACCAACCCAACAGATGTAGAGCGTCTCGTTGAAGGCGGCGTGAAAATCACCTCTGTTAACGTCgg  >  1:1043802/1‑67 (MQ=255) ttACCAACCCAACAGATGTAGAGCGTCTCGTTGAAGGCGGCGTGAAAATCACCTCTGTTAACGTCgg  >  1:2123586/1‑67 (MQ=255) ttACCAACCCAACAGATGTAGAGCGTCTCGTTGAAGGCGGCGTGAAAATCACCTCTGTTAACGTCgg  >  1:1837309/1‑67 (MQ=255) ttACCAACCCAACAGATGTAGAGCGTCTCGTTGAAGGCGGCGTGAAAATCACCTCTGTTAACGTCgg  >  1:1658172/1‑67 (MQ=255) ttACCAACCCAACAGATGTAGAGCGTCTCGTTGAAGGCGGCGTGAAAATCACCTCTGTTAACGTCgg  >  1:1654526/1‑67 (MQ=255) ttACCAACCCAACAGATGTAGAGCGTCTCGTTGAAGGCGGCGTGAAAATCACCTCTGTTAACGTCgg  >  1:1642761/1‑67 (MQ=255) ttACCAACCCAACAGATGTAGAGCGTCTCGTTGAAGGCGGCGTGAAAATCACCTCTGTTAACGTCgg  >  1:161904/1‑67 (MQ=255) ttACCAACCCAACAGATGTAGAGCGTCTCGTTGAAGGCGGCGTGAAAATCACCTCTGTTAACGTCgg  >  1:1449922/1‑67 (MQ=255) ttACCAACCCAACAGATGTAGAGCGTCTCGTTGAAGGCGGCGTGAAAATCACCTCTGTTAACGTCgg  >  1:1349689/1‑67 (MQ=255) ttACCAACCCAACAGATGTAGAGCGTCTCGTTGAAGGCGGCGTGAAAATCACCTCTGTTAACGTCgg  >  1:1219150/1‑67 (MQ=255) ttACCAACCCAACAGATGTAGAGCGTCTCGTTGAAGGCGGCGTGAAAATCACCTCTGTTAACGTCgg  >  1:1083097/1‑67 (MQ=255) ttACCAACCCAACAGATGTAGAGCGTCTCGTTGAAGGCGGCGTGAAAATCACCTCTGTTAACGTCgg  >  1:1068886/1‑67 (MQ=255) ttACCAACCCAACAGATGTAGAGCGTCTCGTTGAAGGCGGCGTGAAAATCACCTCTGTTAACGTCg   >  1:24768/1‑66 (MQ=255) ttACCAACCCAACAGATGTAGAGCGTCTCGTTGAAGGCGGCGTGAAAATCACCTCTGTTAACGTCg   >  1:766557/1‑66 (MQ=255) |                                                                   TTACCAACCCAACAGATGTAGAGCGTCTCGTTGAAGGCGGCGTGAAAATCACCTCTGTTAACGTCGG  >  minE/1206694‑1206760

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑