| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | = 1557960 | 80 (1.260) | 6 (0.100) | 3/92 | NT | 8.2% | coding (1000/1164 nt) | emrK | EmrKY‑TolC multidrug resistance efflux pump, membrane fusion protein component |
| ? | minE | = 1557988 | 61 (1.050) | coding (972/1164 nt) | emrK | EmrKY‑TolC multidrug resistance efflux pump, membrane fusion protein component | |||||
GAGGTCACGGTTGAAGCCAGCTCAGGCATCTCGGCAATGTCTTCGTTCTTCGTATCAATAGTTGCTGTCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > minE/1557890‑1557960‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcatGGAACACCCCTTGCGTATTGGTTTATCGATGACAGCAACTATTGATACGAAGAACGAAGACATTGCC < minE/1557988‑1557922 GAGGTCACGGTTGAAGCCAGCTCAGGCATCTCGGCAATGTCTTCGTTCTTCGTATCAATAGTTGCTGTCAT < 1:400930/71‑1 ACGGTTGAAGCCAGCTCAGGCATCTCGGCAATGTCTTCGTTCTTCGTATCAATAGTTGCTGTCATGGAta < 1:3743683/70‑3 GAAGCCAGCTCAGGCATCTCGGCAATGTCTTCGTTCTTCGTATCAATAGTTGCTGTCAT > 1:1186688/1‑59 CTCAGGCATCTCGGCAATGTCTTCGTTCTTCGTATCAATAGTTGCTGTC < 1:2957505/49‑1 TCAGGCATCTCGGCATTGTCTTCGTTCTTCGTATCAATAGTTGCTGTC < 1:460700/48‑1 TCGGCAATGTCTTCGTTCTTCGTATCAATAGTTGCTGT < 1:1128644/38‑1 TCGGCAATGTCTTCGTTCTTCGTATCAATAGTTGCTGT < 1:3778082/38‑1 TCGGCAATGTCTTCGTTCTTCGTATCAATAGTTGCTGT < 1:3023131/38‑1 GGCAATGTCTTCGTTCTTCGTATCAATAGTTGCTGTCATGGAACACCCCTTGCGTATTGGTTTAT > 1:2222310/1‑65 GGCAATGTCTTCGTTCTTCGTATCAATAGTTGCTGTCATGGAACACCCCTTGCGTATTGGTTTAT > 1:807715/1‑65 GGCAATGTCTTCGTTCTTCGTATCAATAGTTGCTGTCATGGAACACCCCTTGCGTATTGGTTTAT > 1:429858/1‑65 GGCAATGTCTTCGTTCTTCGTATCAATAGTTGCTGTCA > 1:523117/1‑38 GGCAATGTCTTCGTTCTTCGTATCAATAGTTGCTGTCA > 1:3316565/1‑38 GGCAATGTCTTCGTTCTTCGTATCAATAGTTGCTGTCA > 1:635098/1‑38 TGTCTTCGTTCTTCGTATCAATAGTTGCTGTCATGGAACACCCCTTGCGTATTGGTTTATCGAT < 1:2134229/64‑1 TGTCTTCGTTCTTCGTATCAATAGTTGCTGTCATGGAACACCCCTTGCGTATTGGTTTATCGAT < 1:3882031/64‑1 TCTTCGTTCTTCGTATCAATAGTTGCTGTCATGGAACACCCCTTGCGTATTGGTTTATCGATGA > 1:1167034/1‑64 TCATGTAACACCCCTTGCGTATTGGTTTATCGATGACAGCAACTATTGATACGAAGAACGAA < 1:3339299/62‑1 ATGGAACACCCCTTGCGTATTGGTTTATCGATGACAGCAACTATTGATACGAAGAACGAAGACATTGCC > 1:2928762/1‑69 ATGGAACACCCCTTGCGTATTGGTTTATCGATGACAGCAACTATTGATACGAAGAACGAAGACATTGCC > 1:1340459/1‑69 TGGAACACCCCTTGCGTATTGGTTTATCGATGACAGCAACTATTGATACGAAG < 1:4134595/53‑1 TGGAACACCCCTTGCGTATTGGTTTATCGATGACAGCAACTATTGATACGAAG < 1:176388/53‑1 GAGGTCACGGTTGAAGCCAGCTCAGGCATCTCGGCAATGTCTTCGTTCTTCGTATCAATAGTTGCTGTCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > minE/1557890‑1557960‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcatGGAACACCCCTTGCGTATTGGTTTATCGATGACAGCAACTATTGATACGAAGAACGAAGACATTGCC < minE/1557988‑1557922 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |