| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | = 1557960 | 80 (1.260) | 6 (0.100) | 3/92 | NT | 8.2% | coding (1000/1164 nt) | emrK | EmrKY‑TolC multidrug resistance efflux pump, membrane fusion protein component |
| ? | minE | = 1557988 | 61 (1.050) | coding (972/1164 nt) | emrK | EmrKY‑TolC multidrug resistance efflux pump, membrane fusion protein component | |||||
GGCAATGTCTTCGTTCTTCGTATCAATAGTTGCTGTCATCGATAAACCAATACGCAAGGGGTGTTCCATGAGTTCTTTTGGATCAAGAGAAACTTCAACCGGTACACGCTGAACGATTTTGATCCAGTTCCC > minE/1557922‑1558053 | ggCAATGTCTTCGTTCTTCGTATCAATAGTTGCTGTCATCGATAAACCAATACGCAAGGGGTGTTcc < 1:2682485/67‑1 (MQ=255)ggCAATGTCTTCGTTCTTCGTATCAATAGTTGCTGTCATCGATAAACCAATACGCAAGGGGTGTTCCat > 1:2928762‑M2/1‑67 (MQ=255)ggCAATGTCTTCGTTCTTCGTATCAATAGTTGCTGTCATCGATAAACCAATACGCAAGGGGTGTTCCat > 1:1340459‑M2/1‑67 (MQ=255) gCAATGTCTTCGTTCTTCGTATCAATAGTTGCTGTCATCGATAAACCAATACGCAAGGGGTGTTCCATGAg < 1:3410784/71‑1 (MQ=255) cAATGTCTTCGTTCTTCGTATCAATAGTTGCTGTCATCGATAAACCAATACGCAAGGGGTGTTCCATGAg < 1:1325271/70‑1 (MQ=255) cAATGTCTTCGTTCTTCGTATCAATAGTTGCTGTCATCGATAAACCAATACGCAAGGGGTGTTCCATGAGt < 1:3454670/71‑1 (MQ=255) cAATGTCTTCGTTCTTCGTATCAATAGTTGCTGTCATCGATAAACCAATACGCAAGGGGTGTTCCATGAGt < 1:898459/71‑1 (MQ=255) cAATGTCTTCGTTCTTCGTATCAATAGTTGCTGTCATCGATAAACCAATAAGCAAGGGGTGTTCCATGAGt < 1:2001919/71‑1 (MQ=255) aTGTCTTCGTTCTTCGTATCAATAGTTGCTGTCATCGATAAACCAATACGCAAGGGGTGTTCCATGAGTTc > 1:4009922/1‑71 (MQ=255) tcttcgttcttcgtATCAATAGTTGCTGTCATCGATAAACCAATACGCAAGGGGTGTTCCATGAGTTCttt > 1:1113453/1‑71 (MQ=255) tcttcgttcttcgtATCAATAGTTGCTGTCATCGATAAACCAATACGCAAGGGGTGTTCCATGAGTTCttt > 1:3317797/1‑71 (MQ=255) tcttcgttcttcgtATCAATAGTTGCTGTCATCGATAAACCAATACGCAAGGGGTGTTCCATGAGTTCttt < 1:1273992/71‑1 (MQ=255) ttcgttcttcgtATCAATAGTTGCTGTCATCGATAAACCAATACGCAAGGGGTGTTACatga < 1:3339299‑M2/62‑5 (MQ=255) cgttcttcgtATCAATAGTTGCTGTCATCGATAAACCAATACGCAAGGGGTGTTCCATGAGTTCTTTTgg < 1:1034618/70‑1 (MQ=255) cgttcttcgtATCAATAGTTGCTGTCATCGATAAACCAATACGCAAGGGGTGTTCCATGAGTTCTTTTgg < 1:1317016/70‑1 (MQ=255) cgttcttcgtATCAATAGTTGCTGTCATCGATAAACCAATACGCAAGGGGTGTTCCATGAGTTCTTTTg < 1:641864/69‑1 (MQ=255) cgttcttcgtATCAATAGTTGCTGTCATCGATAAACCAATACGCAAGGGGTGTTCCATGAGTTCTTTTg < 1:1686339/69‑1 (MQ=255) cgttcttcgtATCAATAGTTGCTGTCATCGATAAACCAATACGCAAGGGGTGTTCCATGAGTTCTTTTg < 1:2811914/69‑1 (MQ=255) cgttcttcgtATCAATAGTTGCTGTCATCGATAAACCAATACGCAAGGGGTGTTCCATGAGTTCTTTTGGa > 1:1771315/1‑71 (MQ=255) cttcgtATCAATAGTTGCTGTCATCGATAAACCAATACGCAAGGGGTGTTcc > 1:1666977/1‑52 (MQ=255) cttcgtATCAATAGTTGCTGTCATCGATAAACCAATACGCAAGGGGTGTTCCa < 1:176388‑M2/53‑2 (MQ=255) cttcgtATCAATAGTTGCTGTCATCGATAAACCAATACGCAAGGGGTGTTCCa < 1:4134595‑M2/53‑2 (MQ=255) cttcgtATCAATAGTTGCTGTCATCGATAAACCAATACGCAAGGGGTGTTCCATGAGTTCTTTTGGATc > 1:3777582/1‑69 (MQ=255) cgtATCAATAGTTGCTGTCATCGATAAACCAATACGCAAGGGGTGTTCCATGAGTTCTTTTgg > 1:2733714/1‑63 (MQ=255) cgtATCAATAGTTGCTGTCATCGATAAACCAATACGCAAGGGGTGTTCCATGAGTTCTTTTGGATCaa < 1:3281821/68‑1 (MQ=255) cgtATCAATAGTTGCTGTCATCGATAAACCAATACGCAAGGGGTGTTCCATGAGTTCTTTTGGATCaa < 1:1132023/68‑1 (MQ=255) gtATCAATAGTTGCTGTCATCGATAAACCAATACGCAAGGGGTGTTCCATGAGTTCTTTTGGATCAAgaga < 1:4222316/71‑1 (MQ=255) tATCAATAGTTGCTGTCATCGATAAACCAATACGCAAGGGGTGTTCCATGAGTTCTTTTGGATCAAGAGaa < 1:2439251/71‑1 (MQ=255) aGTTGCTGTCATCGATAAACCAATACGCAAGGGGTGTTCCATGAGTTCTTTTGGATCAAGAGAAACTTCaa > 1:2297353/1‑71 (MQ=255) gTTGCTGTCATCGATAAACCAATACGCAAGGGGTGTTCCATGAg > 1:2585372/1‑44 (MQ=255) gTTGCTGTCATCGATAAACCAATACGCAAGGGGTGTTCCATGAg > 1:3751587/1‑44 (MQ=255) gTTGCTGTCATCGATAAACCAATACGCAAGGGGTGTTCCATGAGTTCTTTTGGATCAAGAGAAACTTCAAc < 1:760284/71‑1 (MQ=255) gTTGCTGTCATCGATAAACCAATACGCAAGGGGTGTTCCATGAGTTCTTTTGGATCAAGAGAAACTTCAAc < 1:2089274/71‑1 (MQ=255) ttGCTGTCATCGATAAACCAATACGCAAGGGGTGTTCCATGAGTTCTTTTGGATCAAGAGAAACTTCAAcc > 1:113203/1‑71 (MQ=255) gCTGTCATCGATAAACCAATACGCAAGGGGTGTTCCATGAGTTCTTTTGGATCAAGAGAAACt > 1:492019/1‑63 (MQ=255) gCTGTCATCGATAAACCAATACGCAAGGGGTGTTCCATGAGTTCTTTTGGATCAAGAGAAACt > 1:308962/1‑63 (MQ=255) gCTGTCATCGATAAACCAATACGCAAGGGGTGTTCCATGAGTTCTTTTGGATCAAGAGAAACt > 1:1270451/1‑63 (MQ=255) gCTGTCATCGATAAACCAATACGCAAGGGGTGTTCCATGAGTTCTTTTGGATCAAGAGAAACt > 1:1829783/1‑63 (MQ=255) gCTGTCATCGATAAACCAATACGCAAGGGGTGTTCCATGAGTTCTTTTGGATCAAGAGAAACt > 1:1834727/1‑63 (MQ=255) gCTGTCATCGATAAACCAATACGCAAGGGGTGTTCCATGAGTTCTTTTGGATCAAGAGAAACTTCAACCgg > 1:2385213/1‑71 (MQ=255) tCATCGATAAACCAATACGCAAGGGGTGTTCCatgacagcaactattgatacgaagaacgaaga > 1:1167034‑M2/1‑32 (MQ=255) tCATCGATAAACCAATACGCAAGGGGTGTTCCATGAGTTCTTTTGGATCa < 1:2707294/50‑1 (MQ=255) tCATCGATAAACCAATACGCAAGGGGTGTTCCATGAGTTCTTTTGGATCa < 1:1313902/50‑1 (MQ=255) tCATCGATAAACCAATACGCAAGGGGTGTTCCATGAGTTCTTTTGGATCa < 1:3345368/50‑1 (MQ=255) cATCGATAAACCAATACGCAAGGGGTGTTCCATGAGTTCTTTTGGATCAAGAGAAACTTCAACCGGTacac > 1:3078678/1‑71 (MQ=255) aTCGATAAACCAATACGCAAGGGGTGTTCCatgacagcaactattgatacgaagaacgaagaca < 1:3882031‑M2/64‑35 (MQ=255) aTCGATAAACCAATACGCAAGGGGTGTTCCatgacagcaactattgatacgaagaacgaagaca < 1:2134229‑M2/64‑35 (MQ=255) aTCGATAAACCAATACGCAAGGGGTGTTCCATGAGTTCTTTTGGATCAAGAGAAACTTCAACCGGTACACg > 1:3890003/1‑71 (MQ=255) tCGATAAACCAATACGCAAGGGGTGTTCCATGAGTTCTTTTGGATCAAGAGAAACTTCAACCGGTACACGc < 1:2639906/71‑1 (MQ=255) tCGATAAACCAATACGCAAGGGGTGTTCCATGAGTTCTTTTGGATCAAGAGAAACTTCAACCGGTACACGc < 1:1407502/71‑1 (MQ=255) cGATAAACCAATAAGCAAGGGGTGTTCCATGAGTTCTTTTGGATCAAGAGAAACTTCAAc < 1:2551733/60‑1 (MQ=255) gATAAACCAATACGCAAGGGGTGTTCCATGAGTTCTTTTGGATCAAgagata > 1:1527423/1‑50 (MQ=255) gATAAACCAATACGCAAGGGGTGTTCCATGAGTTCTTTTGGATCAAGAGaaa > 1:3205100/1‑52 (MQ=255) gATAAACCAATACGCAAGGGGTGTTCCATGAGTTCTTTTGGATCAAGAGaaa > 1:69815/1‑52 (MQ=255) gATAAACCAATACGCAAGGGGTGTTCCATGAGTTCTTTTGGATCAAGAGAAACTTCAACCGGTACACGCt > 1:2829036/1‑70 (MQ=255) aTAAACCAATACGCAAGGGGTGTTCCatgacagcaactattgatacgaagaacgaagacattgcc > 1:429858‑M2/1‑26 (MQ=255) aTAAACCAATACGCAAGGGGTGTTCCatgacagcaactattgatacgaagaacgaagacattgcc > 1:2222310‑M2/1‑26 (MQ=255) aTAAACCAATACGCAAGGGGTGTTCCatgacagcaactattgatacgaagaacgaagacattgcc > 1:807715‑M2/1‑26 (MQ=255) tAAACCAATACGCAAGGGGTGTTCCATGAGTTCTTTTGGATCAAGAGAAACTTCAACCGGTACACGCTGaa > 1:3074155/1‑71 (MQ=255) tAAAACAATACGCAAGGGGTGTTCCATGAGTTCTTTTGGATCAAGAGAAACTTCAACCGGTACACGCTGaa > 1:2631004/1‑71 (MQ=255) aCCAATACGCAAGGGGTGTTCCATGAGTTCTTTTGGATCAAGAGAAACTTCAACCGGTACACGCTGAACGa > 1:4028273/1‑71 (MQ=255) ccAATACGCAAGGGGTGTTCCATGAGTTCTTTTGGATCAAGAGAAACTTCAACCGGTACACGCTGAACGAt > 1:4215147/1‑71 (MQ=255) ccAATACGCAAGGGGTGTTCCATGAGTTCTTTTGGATCAAGAGAAACTTCAACCGGTACACGCTGAACGAt > 1:2901131/1‑71 (MQ=255) ccAATACGCAAGGGGTGTTCCATGAGTTCTTTTGGATCAAGAGAAACTTCAACCGGTACACGCTGAACGAt > 1:3320765/1‑71 (MQ=255) aTACGCAAGGGGTGTTCCATGAGTTCTTTTGGATCaa < 1:2335100/37‑1 (MQ=255) tACGCAAGTGGTGTTCCATGAGTTCTTTTGGATCaa < 1:2729987/36‑1 (MQ=255) tACGCAAGGGGTGTTCCATGAGTTCTTTTGGATCAAGAGAAACTTCa < 1:3532584/47‑1 (MQ=255) aCGCAAGGGGTGTTCCATGAGTTCTTTTGGATCAAGAGAAACTTCAACCGGTACACGCTGAACGATTTTGa > 1:3251507/1‑71 (MQ=255) aCGCAAGGGGTGTTCCATGAGTTCTTTTGGATCAAGAGAAACTTCAACCGGTACACGCTGAACGATTTTGa > 1:813390/1‑71 (MQ=255) cGCAAGGGGTGTTCCATGAGTTCTTTTGGATCAAGAGaaa > 1:915128/1‑40 (MQ=255) cGCAAGGGGTGTTCCATGAGTTCTTTTGGATCAAGAGaaa > 1:3071056/1‑40 (MQ=255) cGCAAGGGGTGTTCCATGAGTTCTTTTGGATCAAGAGAAACTTCAACCGGTACACGCTGAACGATTTTGa > 1:2158204/1‑70 (MQ=255) cGCAAGGGGTGTTCCATGAGTTCTTTTGGATCAAGAGAAACTTCAACCGGTACACGCTGAACGATTTTGAt > 1:87665/1‑71 (MQ=255) cGCAAGGGGTGTTCCATGAGTTCTTTTGGATCAAGAGAAACTTCAACCGGTACACGCTGAACGATTTTGAt > 1:4202793/1‑71 (MQ=255) gCAAGGGGTGTTCCATGAGTTCTTTTGGATCAAGAGAAACTTCAACCGGTACACGCTGAACGATTTTGATc < 1:858109/71‑1 (MQ=255) gCAAGGGGTGTTCCATGAGTTCTTTTGGATCAAGAGAAACTTCAACCGGTACACGCTGAACGATTTTGATc < 1:1724243/71‑1 (MQ=255) gCAAGGGGTGTTCCATGAGTTCTTTTGGATCAAGAGAAACTTCAACCGGTACACGCTGAACGATTTTGATc < 1:853053/71‑1 (MQ=255) aGGGGTGTTCCATGAGTTCTTTTGGATCAAGAGAAACTTCAACCGGTACACGCTGAACGATTTTGATCCAg > 1:4206421/1‑71 (MQ=255) gtgtTCCATTAGTTCTTTTGGATCAAGAGAAACTTCAACCGGTACACGCTGAACGa < 1:234053/56‑1 (MQ=255) gtgtTCCATGAGTTCTTTTGGATCAAGAGAAACTTCAACCGGTACACGCTGAACGa < 1:3882829/56‑1 (MQ=255) gtgtTCCATGAGTTCTTTTGGATCAAGAGAAACTTCAACCGGTACACGCTGAACGa < 1:3464583/56‑1 (MQ=255) tgtTCCATGAGTTCTTTTGGATCAAGAGAAACTTCAACCGGTACACGCTGAACGATTTTGATCCAGTTccc < 1:156277/71‑1 (MQ=255) tatccatgacagcaactattgatacgaagaacgaagacattgccgagatgcctgagctggcttcaaccgt < 1:3743683‑M2/68‑66 (MQ=255) | GGCAATGTCTTCGTTCTTCGTATCAATAGTTGCTGTCATCGATAAACCAATACGCAAGGGGTGTTCCATGAGTTCTTTTGGATCAAGAGAAACTTCAACCGGTACACGCTGAACGATTTTGATCCAGTTCCC > minE/1557922‑1558053 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |