| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 1499913 | 41 (0.860) | 13 (0.340) +ATATCACCAG |
4/82 | NT | 24.5% | coding (1314/1626 nt) | mdoD | glucan biosynthesis protein, periplasmic |
| ? | W3110S.gb | 1787483 = | 59 (1.240) | coding (1344/2379 nt) | pps | phosphoenolpyruvate synthase | |||||
CACGCTAAATTCCAGCAACTCCGCATAGACGTAACCGGTATCACCTTCGGCACAAGAAACAGTGACGTTCTCACCGTCTTTCATCCGTTCTGTTGCATCTCCACAGCCCACTACCGCCGGAATGCCCAGTTCACGAGCGA > W3110S.gb/1787414‑1787553 | cACGCTAAATTCCAGCAACTCCGCATAGACGTAACCGGTATCACCTTCGGCACAAGAAACAGTGACGTtct > 1:276889/1‑71 (MQ=255)cACGCTAAATTCCAGCAACTCCGCATAGACGTAACCGGTATCACCTTCGGCACAAGAAACAGTGACGTtct > 1:3378772/1‑71 (MQ=255) aCGCTAAATTCCAGCAACTCCGCATAGACGTAACCGGTATCACCTTCGGCACAAGAAACAGTGACGTtctc < 1:1273807/71‑1 (MQ=255) gCTAAATTCCAGCAACTCCGCATAGACGTAACCGGTATCACCTTCGGCACAAGAAACAGTGACGTTCTCAc > 1:2996876/1‑71 (MQ=255) gCTAAATTCCAGCAACTCCGCATAGACGTAACCGGTATCACCTTCGGCACAAGAAACAGTGACGTTCTCAc > 1:1350316/1‑71 (MQ=255) cTAAATTCCAGCAACTCCGCATAGACGTAACCGGTATCACCTTCGGCACAAGAAACAGTGACGTTCTCAcc > 1:300627/1‑71 (MQ=255) cTAAATTCCAGCAACTCCGCATAGACGTAACCGGTATCACCTTCGGCACAAGAAACAGTGACGTTCTCAcc > 1:1009895/1‑71 (MQ=255) aaTTCCAGCAACTCCGCATAGACGTAACCGGTATCACCTTCGGCACAAGAAACAGTGACGTTCTCACCGt < 1:1724199/70‑1 (MQ=255) aaTTCCAGCAACTCCGCATAGACGTAACCGGTATCACCTTCGGCACAAGAAACAGTGACGTTCTCACCGt < 1:3293022/70‑1 (MQ=255) aaTTCCAGCAACTCCGCATAGACGTAACCGGTATCACCTTCGGCACAAGAAACAGTGACGTTCTCACCGTc > 1:113386/1‑71 (MQ=255) aaTTCCAGCAACTCCGCATAGACGTAACCGGTATCACCTTCGGCACAAGAAACAGTGACGTTCTCACCGTc < 1:2150401/71‑1 (MQ=255) aGCAACTCCGCATAGACGTAACCGGTATCACCTTCGGCACAAGAAACAGTGACGTTCTCACCGTCTTTCAt > 1:3668287/1‑71 (MQ=255) aCTCCGCATAGACGTAACCGGTATCACCTTCGGCACAAGAAACAGTGACGTTCTCACCGTCTTTCATCCGt > 1:156785/1‑71 (MQ=255) aCTCCGCATAGACGTAACCGGTATCACCTTCGGCACAAGAAACAGTGACGTTCTCACCGTCTTTCATCCGt < 1:3075485/71‑1 (MQ=255) aCTCCGCATAGACGTAACCGGTATCACCTTCGGCACAAGAAACAGTGACGTTCTCACCGTCTTTCATCCGt < 1:452541/71‑1 (MQ=255) tCCGCATAGACGTAACCGGTATCACCTTCGGCACAAGAAACAGTGACGTTCTCACCGTCTTTCATCCg < 1:3701307/68‑1 (MQ=255) cGCATAGACGTAACCGTTATCACCTTCGGCACAAGAAACAGTGACGTTCTCACCGTCTTTCATCCGTTCTg < 1:718203/71‑1 (MQ=255) cGCATAGACGTAACCGGTATGACCTTCGGCACAAGAAACAGTGACGTTCTCACCGTCTTTCATCCGTTCTg < 1:4014246/71‑1 (MQ=255) cGCATAGACGTAACCGGTATCACCTTCGGCACAAGAAACAGTGACGTTCTCACCGTCTTTCATCCGTTCTg < 1:3344929/71‑1 (MQ=255) tAGACGTAACCGGTATCACCTTCGGCACAAGAAACAGTGACGTTCTCACCGTCTTTCATCCGTTCt < 1:4033483/66‑1 (MQ=255) aGACGTAACCGGTATCACCTTCGGCACAAGAAACAGTGACGTTCTCACCGTCTTTCATc > 1:1155377/1‑59 (MQ=255) gACGTAACCGGTATCACCTTCGGCACAAGAAACAGTGACGTTCTCACCGTCTTTCATCCGTTCTGTTGCAt > 1:1803944/1‑71 (MQ=255) gTAACCGGTATCACCTTCGGCACAAGAAACAGTGACGTTCTCACCGTCTTTCATCCGTTCTGTTGCAtctc < 1:1669780/71‑1 (MQ=255) gTAACCGGTATCACCTTCGGCACAAGAAACAGTGACGTTCTCACCGTCTTTCATCCGTTCTGTTGCAtctc < 1:4314761/71‑1 (MQ=255) gTAACCGGTATCACCTTCGGCACAAGAAACAGTGACGTTCTCACCGTCTTTCATCCGTTCTGTTGCAtctc < 1:405472/71‑1 (MQ=255) gTAACCGGTATCACCTTCGGCACAAGAAACAGTGACGTTCTCACCGTCTTTCATCCGTTCTGTTGCAtctc < 1:3207143/71‑1 (MQ=255) aaCCGGTATCACCTTCGGCACAAGAAACAGTGACGTTCTCACCGTCTTTCAt < 1:3976541/52‑1 (MQ=255) aaCCGGTATCACCTTCGGCACAAGAAACAGTGACGTTCTCACCGTCTTTCATCCGTTCTGTTGCAtct > 1:1695213/1‑68 (MQ=255) aCCGGTATCACCTTCGGCACAAGAAACAGTGACGTTCTCACCGTCTTTc > 1:4150064/1‑49 (MQ=255) aCCGGTATCACCTTCGGCACAAGAAACAGTGACGTTCTCACCGTCTTTCa > 1:2942997/1‑50 (MQ=255) aCCGGTATCACCTTCGGCACAAGAAACAGTGACGTTCTCACCGTCTTTCa > 1:1548967/1‑50 (MQ=255) aCCGGTATCACCTTCGGCACAAGAAACAGTGACGTTCTCACCGTCTTTCATCCGTTCTGTTGCATCTCca > 1:3143368/1‑70 (MQ=255) cGGTATCACCTTCGGCACAAGAAACAGTGACGTTCTCACCGTCTTTCATCCGTTCTGTTGCATCTCCACAg < 1:3229096/71‑1 (MQ=255) gTATCACCTTCGGCACAAGAAACAGTGACGTTCTCACCGTCTTTCATCCGTTCTGTTGCATCTCCACAGcc < 1:3404852/71‑1 (MQ=255) tATCACCTTCGGCACAAGAAACAGTGACGTTCTCACCGTCTTTCATCCg < 1:3204835/49‑1 (MQ=255) tATCACCTTCGGCACAAGAAACAGTGACGTTCTCACCGTCTTTCATCCg < 1:1221875/49‑1 (MQ=255) aTCACCTTCGGCACAAGAAACAGTGACGTTCTCACCGTCTTTCATCCGTTCTGTTGc < 1:619971/57‑1 (MQ=255) aTCACCTTCGGCACAAGAAACAGTGACGTTCTCACCGTCTTTCATCCGTTCTGTTGc < 1:928795/57‑1 (MQ=255) aTCACCTTCGGCACAAGAAACAGTGACGTTCTCACCGTCTTTCATCCGTTCTGTTGc < 1:2730532/57‑1 (MQ=255) tCACCTTCGGCACAAGAAACAGTGACGTTCTCACCGTCTTTCATCCGTTCTGTTGCATCTCCACAGCCCa < 1:2968519/70‑1 (MQ=255) tCACCTTCGGCACAAGAAACAGTGACGTTATCACCGTCTTTCATACGTTCTGTTGCCTCTCCACAGCCCa > 1:4036838/1‑70 (MQ=255) agggtgaacactatcccatatcaccagCTCACCGTCTTTc > 1:1957181‑M2/28‑40 (MQ=255) agggtgaacactatcccatatcaccagCTCACCGTCTTTc > 1:419153‑M2/28‑40 (MQ=255) aCCTTCGGCACAAGAAACAGTGACGTTCTCACCGTCTTTCATCCGTTCTGTTGCATCTCCACAGCCCAc > 1:2207643/1‑69 (MQ=255) aCCTTCGGCACAAGAAACAGTGACGTTCTCACCGTCTTTCATCCGTTCTGTTGCATCTCCACAGCCCACTa > 1:1873320/1‑71 (MQ=255) ggtgaacactatcccatatcaccagCTCACCGTCTTTc < 1:4411545‑M2/13‑1 (MQ=255) ggtgaacactatcccatatcaccagCTCACCGTCTTTc > 1:615880‑M2/26‑38 (MQ=255) ggtgaacactatcccatatcaccagCTCACCGTCTTTc > 1:2967190‑M2/26‑38 (MQ=255) gtgaacactatcccatatcaccagCTCACCGTCttt < 1:3046398‑M2/12‑1 (MQ=255) gtgaacactatcccatatcaccagCTCACCGTCTTTCa > 1:631796‑M2/25‑38 (MQ=255) tgaacactatcccatatcaccagCTCACCGTCttt < 1:1384387‑M2/12‑1 (MQ=255) tgaacactatcccatatcaccagCTCACCGTCttt < 1:2487708‑M2/12‑1 (MQ=255) tgaacactatcccatatcaccagCTCACCGTCttt < 1:1530326‑M2/12‑1 (MQ=255) tgaacactatcccatatcaccagCTCACCGTCttt < 1:3194004‑M2/12‑1 (MQ=255) tgaacactatcccatatcaccagCTCACCGTCTTTc < 1:611651‑M2/13‑1 (MQ=255) tgaacactatcccatatcaccagCTCACCGTCTTTc < 1:1634429‑M2/13‑1 (MQ=255) tCGGCACAAGAAACAGTGACGTTCTCACCGTCTTTCATCCGTTCTGTTGCATCTCCACAGCCCACTAccgc > 1:1267830/1‑71 (MQ=255) tCGGCACAAGAAACAGTGACGTTCTCACCGTCTTTCATCCGTTCTGTTGCATCTCCACAGCCCACTAc > 1:1752074/1‑68 (MQ=255) cGGCACAAGAAACAGTGACGTTCTCACCGTCTTTCATCCGTTCTGTTGc > 1:3437188/1‑49 (MQ=255) cGGCACAAGAAACAGTGACGTTCTCACCGTCTTTCATCCGTTCTGTTGc > 1:3623856/1‑49 (MQ=255) cGGCACAAGAAACAGTGACGTTCTCACCGTCTTTCATCCGTTCTGTTGCATCTCCACAGCCCACTAccgcc > 1:1167836/1‑71 (MQ=255) cGGCACAAGAAACAGTGACGTTCTCACCGTCTTTCATCCGTTCTGTTGCATCTCCACAGCCCACTAccgcc > 1:2585485/1‑71 (MQ=255) cGGCACAAGAAACAGTGACGTTCTCACCGTCTTTCATCCGTTCTGTTGCATCTCCACAGCCCACTAccgc > 1:1657611/1‑70 (MQ=255) gCACAAGAAACAGTGACGTTCTCACCGTCTTTCATCCGTTCTGTTGCATCTCCACAGCCCACTACCGCCgg < 1:3217457/71‑1 (MQ=255) cacaAGAAACAGTGACGTTCTCACCGTCTTTCATCCGTTCTGTTGCATCTCCACAGCCCACTACCGCCGGa < 1:525677/71‑1 (MQ=255) acaAGAAACAGTGACGTTCTCACCGTCTTTCATCCGt < 1:3154742/37‑1 (MQ=255) acaAGAAACAGTGACGTTCTCACCGTCTTTCATCCGTTc > 1:600032/1‑39 (MQ=255) caAGAAACAGTGACGTTCTCACCGTCTTTCATCCGTTCTGTTGCATCTCCACAGCCCACTAc < 1:3548190/62‑1 (MQ=255) caAGAAACAGTGACGTTCTCACCGTCTTTCATCCGTTCTGTTGCATCTCCACAGCCCACTAc < 1:915284/62‑1 (MQ=255) caAGAAACAGTGACGTTCTCACCGTCTTTCATCCGTTCTGTTGCATCTCCACAGCCCACTACCGCCgg < 1:2268912/68‑1 (MQ=255) aaGAAACAGTGACGTTCTCACCGTCTTTCATCCGTTCTGTTGCATCTCCACAGTCCACTACCGCCGGAATg > 1:3169265/1‑71 (MQ=255) aGAAACAGTGACGTTCTCACCGTCTTTCATCCGTTCTGTTGCAt > 1:2332132/1‑44 (MQ=255) gAAACAGTGACGTTCTCACCGTCTTTCATCCGTTCTGTTGc < 1:657328/41‑1 (MQ=255) gAAACAGTGACGTTCTCACCGTCTTTCATCCGTTCTGTTGCATCTCCACAGCCCACTACCGCCGGAATGcc > 1:3493328/1‑71 (MQ=255) gAAACAGTGACGTTCTCACCGTCTTTCATCCGTTCTGTTGCATCTCCACAGCCCACTACCGCCGGAATGcc > 1:553442/1‑71 (MQ=255) aaaCAGTGACGTTCTCACCGTCTTTCATCCGTTCTGTTGCATCTCCACAGCCCACTACCGCCGGAATGcc > 1:3917662/1‑70 (MQ=255) tGACGTTCTCACCGTCTTTCATCCGTTCTGTTGCATCTCCACAGCCCACTACCGCCGGAATGCCCAGTTCa > 1:2493675/1‑71 (MQ=255) ttCTCACCGTCTTTCATCCGTTCTGTTGCATCTCCACAGCCCACTACCGCCgg < 1:165280/53‑1 (MQ=255) ttCTCACCGTCTTTCATCCGTTCTGTTGCATCTCCACAGCCCACTACCGCCgg < 1:1275759/53‑1 (MQ=255) ttCTCACCGTCTTTCATCCGTTCTGTTGCATCTCCACAGCCCACTACCGCCGGAATGCCCAGTTCACGAg < 1:4067942/70‑1 (MQ=255) tctcACCGTCTTTCATCCGTTCTGTTGCATCTCCACAGCCCACTACCGCCGGAATGCCCAGTTCACGAGc > 1:3175705/1‑70 (MQ=255) ctcACCGTCTTTCATCCGTTCTGTTGCATCTCcaca > 1:1611126/1‑36 (MQ=255) ctcACCGTCTTTCATCCGTTCTGTTGCATCTCCACAGCCCACTACCGCCGGAATGCCCAGTTCACGAGCga > 1:4014759/1‑71 (MQ=255) ctcACCGTCTTTCATCCGTTCTGTTGCATCTCCACAGCCCACTACCGCCGGAATGCCCAGTTCACGAGCga > 1:2550508/1‑71 (MQ=255) ctcACCGTCTTTCATCCGTTCTGTTGCATCTCCACAGCCCACTACCGCCGGAATGCCCAGTTCACGAGCga > 1:3564673/1‑71 (MQ=255) | CACGCTAAATTCCAGCAACTCCGCATAGACGTAACCGGTATCACCTTCGGCACAAGAAACAGTGACGTTCTCACCGTCTTTCATCCGTTCTGTTGCATCTCCACAGCCCACTACCGCCGGAATGCCCAGTTCACGAGCGA > W3110S.gb/1787414‑1787553 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |