| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 236798 | 33 (0.680) | 203 (9.060) +TTTAATATCAGTAAACCGGACATAACC |
51/46 | NT | 91.8% | coding (732/732 nt) | dnaQ | DNA polymerase III epsilon subunit |
| ? | W3110S.gb | 4124504 = | 46 (0.940) | intergenic (+106/‑1) | damX/dam | hypothetical protein/DNA adenine methylase | |||||
Only 100 of 634 total aligned reads displayed.
GATTGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/236729‑236798‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAACG > W3110S.gb/4124504‑4124572 ||||||||||||||||||||||||||| GATTGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAT < 1:3517901/71‑1 TTGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGATCATAATTT < 1:2473245/71‑1 TGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTT > 1:2029650/1‑70 GCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTA < 1:2569920/70‑1 CAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAAT < 1:2325633/71‑1 CAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAAT < 1:1380613/71‑1 CTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATAT > 1:3399339/1‑70 CTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATAT < 1:541318/70‑1 CATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTT < 1:3307983/63‑1 ATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAG > 1:4251591/1‑70 TGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTA < 1:192513/71‑1 AGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAAC < 1:945425/71‑1 AGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAA < 1:2739413/70‑1 TCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACA < 1:1040120/71‑1 TCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACAT > 1:2438776/1‑70 GATCTGGTGCAGAAGAAAGGCGGAATTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACAT < 1:4153836/68‑1 GATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACAT < 1:1521234/68‑1 GATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAA > 1:728878/1‑50 TCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTA > 1:2501744/1‑47 CTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCA > 1:1016596/1‑71 CTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAAC > 1:2286894/1‑68 GTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATG > 1:3226571/1‑70 TGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACC < 1:4569714/65‑1 CAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGA < 1:3261778/71‑1 GAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAA < 1:803497/71‑1 AAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAA < 1:1900542/71‑1 AAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAA > 1:3701048/1‑70 AGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAA < 1:4713/71‑1 AGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAA < 1:265376/71‑1 AGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAA < 1:3598242/71‑1 AGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAA < 1:276961/71‑1 GAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAA > 1:3883648/1‑70 GAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAA > 1:302872/1‑69 GAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCG < 1:2189053/49‑1 GAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTA > 1:3168433/1‑44 AAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATC < 1:2140683/70‑1 GAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTT < 1:4331619/71‑1 GAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAA < 1:1668517/61‑1 AGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTT < 1:2599701/71‑1 AGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTT < 1:1829651/71‑1 GTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTT < 1:31971/71‑1 GTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTT > 1:3489309/1‑71 TTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTG < 1:1076834/71‑1 GCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTG > 1:385629/1‑69 CCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGA < 1:4063393/69‑1 CCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTG < 1:845006/68‑1 CTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGT < 1:294677/71‑1 CTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGT > 1:647102/1‑71 CTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAA < 1:4473588/53‑1 TCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGT < 1:2807388/70‑1 TCTGGCGAGCATAATTTAATATCAGTAAACCGGACA < 1:2667983/36‑1 TGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGG > 1:2874236/1‑71 TGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTT < 1:3099944/59‑1 TGGCGAGCATAATTTAATATCAGTAAACCGGACATAA > 1:1307328/1‑37 TGGCGAGCATAATTTAATATCAGTAAACCGGACATAA > 1:573602/1‑37 GCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCA < 1:3048069/71‑1 GCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCA < 1:2839963/71‑1 GCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGG > 1:2239657/1‑69 GCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGG > 1:4015468/1‑69 GCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAAT > 1:2985099/1‑50 AGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCG > 1:2062629/1‑51 GCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGG < 1:2368281/71‑1 CATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAA > 1:767635/1‑59 AATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTT < 1:428307/50‑1 AATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATC < 1:1175203/43‑1 ATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAG > 1:1272002/1‑71 ATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTT < 1:3640327/50‑1 TTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTT > 1:4373088/1‑51 TTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATC > 1:982094/1‑41 TAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTAT > 1:1239008/1‑71 TAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTAT > 1:1722564/1‑71 TAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAA > 1:4187613/1‑52 ATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCC < 1:4109883/71‑1 ATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATC < 1:3959773/70‑1 ATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAA < 1:685999/50‑1 TCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGA < 1:1481764/46‑1 TCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTT > 1:2000499/1‑40 CAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGT > 1:1620462/1‑48 AGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTG < 1:3334088/70‑1 TAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAG < 1:3120913/59‑1 TAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCA < 1:1853327/57‑1 TAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCA < 1:2399115/57‑1 TAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGG < 1:2106239/48‑1 TAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAA > 1:42096/1‑43 TAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTG < 1:3438857/41‑1 TAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTT < 1:1584799/38‑1 agACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTT > 1:3935308/3‑70 AACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGA > 1:1790921/1‑40 AACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGA > 1:2276778/1‑40 ACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTG < 1:2540379/38‑1 CCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATG < 1:4134086/71‑1 GGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTG < 1:4511260/66‑1 GACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCC > 1:4417220/1‑58 CATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCA > 1:3907872/1‑41 ATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGG > 1:598124/1‑44 TAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAA < 1:895947/47‑1 AACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTT‑ATGATATTAAAC > 1:518099/1‑71 AACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAG > 1:3758830/1‑39 ACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGA > 1:1440185/1‑63 ACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCC > 1:1344120/1‑52 ||||||||||||||||||||||||||| GATTGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/236729‑236798‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAACG > W3110S.gb/4124504‑4124572 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |