| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 236798 | 33 (0.680) | 203 (9.060) +TTTAATATCAGTAAACCGGACATAACC |
51/46 | NT | 91.8% | coding (732/732 nt) | dnaQ | DNA polymerase III epsilon subunit |
| ? | W3110S.gb | 4124504 = | 46 (0.940) | intergenic (+106/‑1) | damX/dam | hypothetical protein/DNA adenine methylase | |||||
Only 100 of 499 total aligned reads displayed.
AGTTGCCTGAAGCGCTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAACGG > W3110S.gb/4124435‑4124573 | ctggtgcagaagaaaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCa > 1:1016596‑M2/70‑71 (MQ=255)ctggtgcagaagaaaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCa > 1:2521849‑M2/70‑71 (MQ=255)ctggtgcagaagaaaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCa > 1:669780‑M2/70‑71 (MQ=255)aGTTGCCTGAAGCGCTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCa > 1:1631968/1‑71 (MQ=255) gtgcagaagaaaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccc < 1:1048962‑M2/1‑1 (MQ=255) gtgcagaagaaaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCAt < 1:2033541‑M2/3‑1 (MQ=255) gtgcagaagaaaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATg > 1:3226571‑M2/67‑70 (MQ=255) gtgcagaagaaaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATg > 1:2684709‑M2/67‑70 (MQ=255) gtgcagaagaaaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataacaCAt < 1:1773977‑M2/3‑1 (MQ=255) cagaagaaaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCAt > 1:2445560‑M2/64‑66 (MQ=255) aagaaaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGaaaa < 1:4129186‑M2/11‑1 (MQ=255) aagaaaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGaaa > 1:4264279‑M2/61‑70 (MQ=255) aaGCGCTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGaaa > 1:3341391/1‑70 (MQ=255) agaaaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATga > 1:2401762‑M2/60‑64 (MQ=255) agaaaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGaaaaa > 1:4147065‑M2/60‑71 (MQ=255) agaaaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGaaaaa < 1:276961‑M2/12‑1 (MQ=255) agaaaggcggaagttgcctatggcgagcataatttaatatcagtaaaccggacataaccCATGAAGaaaaa < 1:1680006‑M2/12‑1 (MQ=255) aGCGCTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGaaaaa < 1:180710/71‑1 (MQ=255) gaaaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGaaaa > 1:302872‑M2/59‑69 (MQ=255) gaaaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAAt > 1:1839758‑M2/59‑71 (MQ=255) aaaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATc < 1:2558760‑M2/14‑1 (MQ=255) aaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATc < 1:2140683‑M2/14‑1 (MQ=255) cggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCt > 1:814525‑M2/53‑71 (MQ=255) ggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCtt > 1:2307431‑M2/52‑71 (MQ=255) tGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCttt < 1:4574397/71‑1 (MQ=255) gaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCttt < 1:620371‑M2/21‑1 (MQ=255) aagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCtttt < 1:4288707‑M2/22‑1 (MQ=255) agttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCttttt > 1:387649‑M2/49‑71 (MQ=255) gttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCtttttt > 1:3489309‑M2/48‑71 (MQ=255) gttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCtttttt < 1:31971‑M2/24‑1 (MQ=255) gttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCtttt < 1:3528329‑M2/22‑1 (MQ=255) ttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCtttttt < 1:1094381‑M2/24‑1 (MQ=255) ttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTg < 1:3175000‑M2/25‑1 (MQ=255) ttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTg < 1:4451673‑M2/25‑1 (MQ=255) ttgcctctgacgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTg < 1:857256‑M2/25‑1 (MQ=255) gcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTg > 1:914912‑M2/45‑69 (MQ=255) cctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGa < 1:4063393‑M2/26‑1 (MQ=255) ctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTg < 1:2279470‑M2/25‑1 (MQ=255) tctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGt < 1:2807388‑M2/29‑1 (MQ=255) ctgtcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTg < 1:1449513‑M2/25‑1 (MQ=255) ctggcgagcataatttaatatcagtaaaccggacataaccCa > 1:2003989‑M2/41‑42 (MQ=255) ctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTgg > 1:4226524‑M2/41‑71 (MQ=255) tggcgagcataatttaatatcagtaaaccggacataaccCATGAAGaaaaa > 1:3845823‑M2/40‑51 (MQ=255) ctggagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTggg > 1:4507076‑M2/39‑70 (MQ=255) gcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTggg > 1:2239657‑M2/38‑69 (MQ=255) gcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCa < 1:2839963‑M2/34‑1 (MQ=255) tctcCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGaa < 1:4205423/63‑1 (MQ=255) tctcCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAg > 1:960399/1‑71 (MQ=255) agcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATcgcg > 1:2062629‑M2/35‑51 (MQ=255) gcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAgggg < 1:2368281‑M2/38‑1 (MQ=255) cataatttaatatcagtaaaccggacataaccCATGAAGAAAAATcgc > 1:538213‑M2/33‑48 (MQ=255) cataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGaa > 1:3273392‑M2/33‑59 (MQ=255) cacaGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAgg < 1:1470103/68‑1 (MQ=255) ataatttaatatcagtaaaccggacataaccCATGAAGaaa < 1:3151131‑M2/10‑1 (MQ=255) ataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGc < 1:1250147‑M2/40‑1 (MQ=255) acaGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAggggg > 1:3371751/1‑70 (MQ=255) taatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGaa > 1:4360793‑M2/31‑57 (MQ=255) taatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCa < 1:3311975‑M2/34‑1 (MQ=255) taatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGc > 1:2192901‑M2/31‑70 (MQ=255) aatttaatatcagtaaaccggacataaccCATGAAGAAAAATc < 1:1175203‑M2/14‑1 (MQ=255) aGCCGGATAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAg < 1:2878605/57‑1 (MQ=255) atttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGa > 1:1883267‑M2/29‑54 (MQ=255) tttaatatcagtaaaccggacataaccCATGAAGAAAAATc > 1:982094‑M2/28‑41 (MQ=255) tttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGaa < 1:4178375‑M2/27‑1 (MQ=255) ttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTa > 1:3680916‑M2/27‑71 (MQ=255) taatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGaa > 1:3610131‑M2/26‑52 (MQ=255) taatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTAt > 1:1239008‑M2/26‑71 (MQ=255) atatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCa < 1:784135‑M2/41‑1 (MQ=255) atatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATcc < 1:4109883‑M2/48‑1 (MQ=255) atatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATc < 1:3959773‑M2/47‑1 (MQ=255) tatcagtaaaccggacataaccCATGAAGAAAAAt < 1:295545‑M2/13‑1 (MQ=255) tcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCt < 1:1917698‑M2/51‑1 (MQ=255) gtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGa < 1:1400808‑M2/26‑1 (MQ=255) gtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGa < 1:1618226‑M2/26‑1 (MQ=255) taaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTg < 1:3438857‑M2/25‑1 (MQ=255) taaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGa < 1:3734608‑M2/26‑1 (MQ=255) taaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTggg < 1:3109730‑M2/32‑1 (MQ=255) agaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCtt > 1:3935308‑M2/16‑70 (MQ=255) aaccggacataaccCATGAAGAAAAATCGCGCTTTTTTg < 1:2589831‑M2/25‑1 (MQ=255) aaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAATTATCCCCTGCTtga > 1:737744‑M2/15‑71 (MQ=255) aaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCt > 1:692148‑M2/15‑68 (MQ=255) accggacataaccCATGAAGAAAAATCGCGCtttttt < 1:3002619‑M2/24‑1 (MQ=255) accggacataaccCATGAAGAAAAATCGCGCtttttt < 1:1721165‑M2/24‑1 (MQ=255) aTTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTtgat > 1:2708120/1‑71 (MQ=255) ccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGAGCAAGt < 1:2614637‑M2/44‑1 (MQ=255) ggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTtga < 1:474818‑M2/57‑1 (MQ=255) agttagtCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTtgatga > 1:2107039/1‑70 (MQ=255) ttagtCAGCATGAAGAAAAATCGCGCTTTTTTGaa < 1:577134/35‑1 (MQ=255) tagtCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAggg > 1:1553885/1‑44 (MQ=255) cataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCa > 1:3907872‑M2/8‑41 (MQ=255) cataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTAt < 1:2489847‑M2/46‑1 (MQ=255) taaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGc < 1:135691‑M2/33‑1 (MQ=255) taaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTaa < 1:355286‑M2/66‑1 (MQ=255) gtCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTa < 1:4014582/70‑1 (MQ=255) aaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAg > 1:3758830‑M2/5‑39 (MQ=255) aaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTaaa > 1:4386116‑M2/5‑71 (MQ=255) aaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTaaa > 1:1322940‑M2/5‑71 (MQ=255) aaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTaaa > 1:1273442‑M2/5‑71 (MQ=255) aaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTT‑ATGATATTAAAc > 1:518099‑M2/5‑71 (MQ=255) accCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTAt > 1:3084185‑M2/4‑49 (MQ=255) | AGTTGCCTGAAGCGCTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAACGG > W3110S.gb/4124435‑4124573 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |