New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	W3110S.gb	= 641963	40 (0.820)	50 (1.250) +AGAACTGTT	5/82	NT	56.0%	coding (653/1239 nt)	ybdR	predicted oxidoreductase, Zn‑dependent and NAD(P)‑binding
	?	W3110S.gb	1868457 =	56 (1.150)					intergenic (‑271/‑165)	mipA/yeaG	scaffolding protein for murein synthesizing machinery/conserved hypothetical protein with nucleoside triphosphate hydrolase domain

CTCGGTGCGGAACAGA‑TTTTTGTTGTTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/641935‑641963 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTTGAAGGTGTATC  >  W3110S.gb/1868457‑1868471                               |||||||||                aaCGGTGAGAAACAGATTTTTTGTTGTTGAAGAACTGTTTTTTGAAG         >  1:2401107/3‑47 aaCGGTGAGAAACAGATTTTTTGTTGTTGAAGAACTGTTTTTTGAAG         >  1:2953948/3‑47  aCGGTGAGAAACAGATTTTTTGTTGTTGAAGAACTGTTTTTTGAAGGTG      >  1:3595499/2‑49  aCGGTGAGAAACAGATTTTTTGTTGTTGAAGAACTGTTTTTTGAAGGT       <  1:2892136/47‑1  aCGGTGAGAAACAGATTTTTTGTTGTTGAAGAACTGTTTTTTGAAGGT       <  1:2071070/47‑1  aCGGTGAGAAACAGATTTTTTGTTGTTGAAGAACTGTTTTTTGAA          >  1:3358412/2‑45   CGGTGAGAAACAGATTTTTTGTTGTTGAAGAACTGTTTTTTGAAGGTGTA    <  1:3406317/50‑1   CGGTGAGAAACAGATTTTTTGTTGTTGAAGAACTGTTTTTT             <  1:4227811/41‑1    GGTGAGAAACAGATTTTTTGTTGTTGAAGAACTGTTTTTTGAAGG        >  1:1833287/1‑45          aAACAGATTTTTTGTTGTTGAAGAACTGTTTTTTGAAGGTGTAg   <  1:2115611/43‑2          aAACAGATTTTTTGTTGTTGAAGAACTGTTTTTTGAAGGTGTA    <  1:3761256/42‑1          aAACAGATTTTTTGTTGTTGAAGAACTGTTTTTTGAAGGTGTA    <  1:1532519/42‑1          aAACAGATTTTTTGTTGTTGAAGAACTGTTTTTTGAAGGTGTA    <  1:3352355/42‑1          aAACAGATTTTTTGTTGTTGAAGAACTGTTTTTTGAAGGTGTA    <  1:2902900/42‑1          aAACAGATTTTTTGTTGTTGAAGAACTGTTTTTTGAAGGTGTA    <  1:1831078/42‑1          aAACAGATTTTTTGTTGTTGAAGAACTGTTTTTTGAAGGTGTA    <  1:1146234/42‑1          aAACAGATTTTTTGTTGTTGAAGAACTGTTTTTTGAA          >  1:4074947/2‑37          aAACAGATTTTTTGTTGTTGAAGAACTGTTTTTTGAA          >  1:1685898/2‑37          aAACAGATTTTTTGTTGTTGAAGAACTGTTTTTTGAA          >  1:667108/2‑37          aAACAGATTTTTTGTTGTTGAAGAACTGTTTTTTGA           <  1:3904495/35‑1          aAACAGATTTTTTGTTGTTGAAGAACTGTTTTTTG            >  1:1103156/2‑35          aAACAGATTTTTTGTTGTTGAAGAACTGTTTTTTG            <  1:513051/34‑1           AACAGATTTTTTGTTGTTGAAGAACTGTTTTTTGAAGGTGTAg   <  1:2609137/43‑2           AACAGATTTTTTGTTGTTGAAGAACTGTTTTTTGAAGGTGTAg   <  1:773669/43‑2           AACAGATTTTTTGTTGTTGAAGAACTGTTTTTTGAAGGTGTA    <  1:1145266/42‑1           AACAGATTTTTTGTTGTTGAAGAACTGTTTTTTGAAGGT       <  1:2171273/39‑1            ACAGATTTTTTGTTGTTGAAGAACTGTTTTTTGAAGGTGTAga  >  1:2442347/1‑41            ACAGATTTTTTGTTGTTGAAGAACTGTTTTTTGAAGGTGTAga  >  1:4447040/1‑41            ACAGATTTTTTGTTGTTGAAGAACTGTTTTTTGAAGGTGTAga  >  1:1249401/1‑41            ACAGATTTTTTGTTGTTGAAGAACTGTTTTTTGAAGGTGTAga  >  1:4024064/1‑41            ACAGATTTTTTGTTGTTGAAGAACTGTTTTTTGAAGGTGTAga  >  1:1409307/1‑41            ACAGATTTTTTGTTGTTGAAGAACTGTTTTTTGAAGGTGTAga  >  1:3792494/1‑41            ACAGATTTTTTGTTGTTGAAGAACTGTTTTTTGAAGGTGTAga  >  1:3784017/1‑41            ACAGATTTTTTGTTGTTGAAGAACTGTTTTTTGAAGGTGTAga  >  1:1414607/1‑41            ACAGATTTTTTGTTGTTGAAGAACTGTTTTTTGAAGGTGTAga  >  1:2991827/1‑41            ACAGATTTTTTGTTGTTGAAGAACTGTTTTTTGAAGGTGTAga  >  1:1791081/1‑41            ACAGATTTTTTGTTGTTGAAGAACTGTTTTTTGAAGGTGTAg   <  1:704101/42‑2            ACAGATTTTTTGTTGTTGAAGAACTGTTTTTTGAAGGTGTAg   <  1:467482/42‑2            ACAGATTTTTTGTTGTTGAAGAACTGTTTTTTGAAGGTGTA    >  1:93598/1‑41            ACAGATTTTTTGTTGTTGAAGAACTGTTTTTTGAAGGT       >  1:1545019/1‑38            ACAGATTTTTTGTTGTTGAAGAACTGTTTTTTGAAG         >  1:1448074/1‑36            ACAGATTTTTTGTTGTTGAAGAACTGTTTTTTGAA          >  1:1238611/1‑35            ACAGATTTTTTGTTGTTGAAGAACTGTTTTTTGAA          >  1:1667085/1‑35            ACAGATTTTTTGTTGTTGAAGAACTGTTTTTTGAA          >  1:607083/1‑35            ACAGATTTTTTGTTGTTGAAGAACTGTTTTTTGAA          >  1:1076327/1‑35            ACAGATTTTTTGTTGTTGAAGAACTGTTTTTTGAA          >  1:2071847/1‑35            ACAGATTTTTTGTTGTTGAAGAACTGTTTTTTGAA          >  1:842194/1‑35            ACAGATTTTTTGTTGTTGAAGAACTGTTTTTTGAA          >  1:1557259/1‑35                 tTTTTTGTTGTTGAAGAACTGTTTTTTGATGGTGTA    <  1:595131/35‑1                  TTTTTGTTGTTGAAGAACTGTTTTTTGAAGGTGTA    <  1:4297624/35‑1                  TTTTTGTTGTTGAAGAACTGTTTTTTGAAGGTGTA    >  1:1613288/1‑35                   TTTTGTTGTTGAAGAACTGTTTTTTGAAGGTGTAg   >  1:4087082/1‑34                   TTTTGTTGTTGAAGAACTGTTTTTTGAAGGTGTAg   >  1:4081723/1‑34                               |||||||||                CTCGGTGCGGAACAGA‑TTTTTGTTGTTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/641935‑641963 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTTGAAGGTGTATC  >  W3110S.gb/1868457‑1868471

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.