New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? W3110S.gb = 122552928 (0.570)11 (0.300)
+GCAAAAGATTAC		 6/76 NT 36.7% intergenic (+45/+327) ycgI/minE hypothetical protein/cell division topological specificity factor
?W3110S.gb = 3595831 22 (0.450)intergenic (+56/+214) mobB/rrfA molybdopterin‑guanine dinucleotide biosynthesis protein B/5S ribosomal RNA

GTTTTCGTTTACAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/1225515‑1225529
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCGCAGAAAAAAAT  <  W3110S.gb/3595831‑3595818
               ||||||||||||              
tTTTTCGTTTACAGGGCAAAAGATTACGCGCAGAAAAAA    >  1:2129735/2‑39
tTTTTCGTTTACAGGGCAAAAGATTACGCGCAGAAAA      >  1:3080823/2‑37
tTTTTCGTTTACAGGGCAAAAGATTACGCGCAGAAA       >  1:1960959/2‑36
 TTTTCGTTTACAGGGCAAAAGATTACGCGCAGAAAAAAA   <  1:1928075/39‑1
 TTTTCGTTTACAGGGCAAAAGATTACGCGCAGAAAAAAA   >  1:3762045/1‑39
 TTTTCGTTTACAGGGCAAAAGATTACGCGCAAAAAAA     <  1:3823860/37‑1
 TTTTCGTTTACAGGGCAAAAGATTACGCGCAAAAAAA     <  1:630792/37‑1
  TTTCGTTTACAGGGCAAAAGATTACGCGCAGAAAAAA    <  1:2804250/37‑1
   TTCGTTTACAGGGCAAAAGATTACGCGCAGAAAAAAA   >  1:2130856/1‑37
    TCGTTTACAGGGCAAAAGATTACGCGCAGAAAAAAA   >  1:1498089/1‑36
      GTTTACAGGGCAAAAGATTACGCGCAGAAAAAAAg  >  1:249712/1‑34
               ||||||||||||              
GTTTTCGTTTACAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/1225515‑1225529
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCGCAGAAAAAAAT  <  W3110S.gb/3595831‑3595818

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.