| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 3569741 = | 77 (1.580) | 4 (0.090) | 3/88 | NT | 6.2% | coding (276/1407 nt) | yihP | predicted transporter |
| ? | W3110S.gb | 3569763 = | 53 (1.240) | coding (298/1407 nt) | yihP | predicted transporter | |||||
CCGACAAAGTTGGCGATCGCCAGTAAGGTGACCGGGAATGACGCATACAGAATAAAAGGACGGAACTTACCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/3569815‑3569741‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccttttATTCTGTATGCGTCATTCCCGGTCACCTTACTGGCGATCGCCAACTTTGTCGGCACACCGTTTGATGTC > W3110S.gb/3569763‑3569831 CCGACAAAGTTGGCGATCGCCAGTAAGGTGACCGGGAATGACGCATACAGAATAAAAGGACGGAACTTACC > 1:4249625/1‑71 CGACAAAGTTGGCGATCGCCAGTAAGGTGACCGGGAATGACGCATACAGAATAAAAGGACGGAACTTACCT > 1:3897170/1‑71 GACAAAGTTGGCGATCGCCAGTAAGGTGACCGGGAATGACGCATACAGAATAAAAGGACGGAACTTACCTT < 1:862739/71‑1 GACAAAGTTGGCGATCGCCAGTAAGGTGACCGGGAATGACGCATACAGAATAAAAGGACGGAACTTACCTT < 1:4453998/71‑1 ACAAAGTTGGCGATCGCCAGTAAGGTGACCGGGAATGACGCATACAGAATAAAAGGACGGAACTTACCTTT < 1:957438/71‑1 CAAAGTTGGCGATCGCCAGTAAGGTGACCGGGAATGACGCATACAGAATAAAAGGACGGAACTTACCTTTT < 1:1228649/71‑1 CAAAGTTGGCGATCGCCAGTAAGGTGACCGGGAATGACGCATACAGAATAAAAGGACGGAACTTACCTTTT > 1:3525336/1‑71 GATCGCCAGTAAGGTGACCGGGAATGACGCATACAGAATAAAAGGACGGAACTTACCTTT < 1:1215981/60‑1 GATCGCCAGTAAGGTGACCGGGAATGACGCATACAGAATAAAAGGACGGAACTTACCTTT < 1:3302661/60‑1 TCGCCAGTAAGGTGACCGGGAATGACGCATACAGAATAAAAGGACGGAACTTACCTTTT > 1:1362880/1‑59 TCGCCAGTAAGGTGACCGGGAATGACGCATACAGAATAAAAGGACGGAACTTACCTTTT > 1:1694347/1‑59 TCGCCAGTAAGGTGACCGGGAATGACGCATACAGAATAAAAGGACGGAACTTACCTTT < 1:808663/58‑1 GGAATGACGCATACAGAATAAAAGGACGGAACTTACCTTTT > 1:1615/1‑41 AAAGGACGGAACTTACCTTTTATTCTGTATGCGTCATTCCCGGTCACCTTACTGGCGATCGCCAACTTTGT < 1:1266532/71‑1 AAGGACGGAACTTACCTTTTATTCTGTATGCGTCATTCCCGGTCACCTTACTGGCGATCGCCAACTTTGT < 1:876852/70‑1 AAGGACGGAACTTACCTTTTATTCTGTATGCGTCATTCCCGGTCACCTTACTGGCGATCGCC < 1:4209855/62‑1 GGACGGAACTTACCTTTTATTCTGTATGCGTCATTACCGGTCACCTTACTGG > 1:3036969/1‑52 CCTTTTATTCTGTATGCGTCATTCCCGGTCACCTTACTGGCGATCGCCAACTTTGTC > 1:4347788/1‑57 CTTTTATTCTGTATGCGTCATTCCCGGTCACCTTACTGGCGATCGCCAACTTTGTCGG < 1:4439267/58‑1 TTTTATTCTGTATGCGTCATTCCCGGTCACCTTACTGGCGATCGCCAACTTTGTCGGCACACCGTTT < 1:2317900/67‑1 TTTTATTCTGTATGCGTCATTCCCGGTCACCTTACTGGCGATCGCCAACTTT < 1:92058/52‑1 TTTATTCTGTATGCGTCATTCCCGGTCACCTTACTGGCGATCGCCAACTTTGTCGGCACACCGTTTGATGT > 1:2387223/1‑71 TTTATTCTGTATGCGTCATTCCCGGTCACCTTACTGGCGATCGCCAACTTTGTCGGCA > 1:1780829/1‑58 TTTATTCTGTATGCGTCATTCCCGGTCACCTTACTGGCGATCGCCA < 1:2920270/46‑1 TTATTCTGTATGCGTCATTCCCGGTCACCTTACTGGCGATCGCCAACTTTGTCGGCACACCGTTTGATGT > 1:1746024/1‑70 TTATTCTGTATGCGTCATTCCCGGTCACCTTACTGGCGATCGCCAACTTTGTCGGCACACCGTTTGATGT > 1:2355882/1‑70 TTATTCTGTATGCGTCATTCCCGGTCACCTTACTGGCGATCGCCAACTTTGTCGGCACACCGTTTGATGT < 1:1902958/70‑1 TATTCTGTATGCGTCATTCCCGGTCACCTTACTGGCGATCGCCAACTTTGTCGGCACACCGTTTGATGTC < 1:4256305/70‑1 TATTCTGTATGCGTCATTCCCGGTCACCTTACTGGCGATCGCCAACTTTGTCGGCACACCGTTTGATGTC < 1:1786637/70‑1 CCGACAAAGTTGGCGATCGCCAGTAAGGTGACCGGGAATGACGCATACAGAATAAAAGGACGGAACTTACCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/3569815‑3569741‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccttttATTCTGTATGCGTCATTCCCGGTCACCTTACTGGCGATCGCCAACTTTGTCGGCACACCGTTTGATGTC > W3110S.gb/3569763‑3569831 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |