| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 71265 | 55 (1.130) | 139 (3.960) +AGGGTCCCTAAGTC |
58/72 | NT | 84.1% | coding (879/879 nt) | araC | DNA‑binding transcriptional dual regulator |
| ? | W3110S.gb | 3464879 = | 18 (0.370) | intergenic (‑255/+46) | murB/rrfB | UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding/5S ribosomal RNA | |||||
Only 100 of 326 total aligned reads displayed.
GGGCCAGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAATCCCTGCTTCGTCCA > W3110S.gb/71195‑71335 | gCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAag > 1:3285779‑M1/1‑69 (MQ=255) gCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAa < 1:1808653‑M1/70‑2 (MQ=255) aGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggt > 1:2373524‑M1/1‑66 (MQ=255) aGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggt < 1:603635‑M1/71‑6 (MQ=255) gCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtc > 1:3524451‑M1/1‑65 (MQ=255) ccGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccc < 1:1469015‑M1/71‑9 (MQ=255) cgagcgagTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAAc > 1:3102573/1‑70 (MQ=255) cgagcgagTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAAc > 1:3891442/1‑70 (MQ=255) cgagcgagTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccct < 1:2678823‑M1/71‑10 (MQ=255) cgagcgagTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccct < 1:2924764‑M1/71‑10 (MQ=255) gagcgagTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGt < 1:645394/66‑1 (MQ=255) gagcgagTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtcccta < 1:4582382‑M1/71‑11 (MQ=255) agcgagTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccct > 1:752618‑M1/1‑60 (MQ=255) agcgagTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagg > 1:1552872‑M1/1‑60 (MQ=255) gcgagTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaag < 1:2314287‑M1/71‑13 (MQ=255) ttccgtgCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagt > 1:3967776‑M1/4‑54 (MQ=255) ccgTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtcta > 1:1662446‑M1/2‑52 (MQ=255) ccgTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtcta > 1:1175954‑M1/2‑52 (MQ=255) ccgTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtc > 1:963351‑M1/2‑52 (MQ=255) ccgTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaa > 1:3986332‑M1/2‑52 (MQ=255) ccgTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAa > 1:826162‑M1/2‑52 (MQ=255) gTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaac > 1:2506134‑M1/1‑50 (MQ=255) gTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCa > 1:1241414/1‑64 (MQ=255) gTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAAtt < 1:257984/71‑1 (MQ=255) tGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATaa < 1:243585/49‑1 (MQ=255) tGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacga < 1:3783668‑M1/71‑23 (MQ=255) tGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacga < 1:2991150‑M1/71‑23 (MQ=255) tGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacga < 1:1081319‑M1/71‑23 (MQ=255) ccGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaa < 1:1958466‑M1/70‑24 (MQ=255) cGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaag < 1:572591‑M1/71‑26 (MQ=255) cGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaa < 1:232377‑M1/63‑18 (MQ=255) cGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACg < 1:414351/71‑1 (MQ=255) gTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggc < 1:562198‑M1/71‑28 (MQ=255) gTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggc > 1:1112164‑M1/1‑44 (MQ=255) gTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccct < 1:477642‑M1/53‑10 (MQ=255) gtgAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcc > 1:1976078‑M1/1‑41 (MQ=255) gtgAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAaggg < 1:4388167‑M1/45‑5 (MQ=255) tgAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAtt < 1:2180535/42‑1 (MQ=255) gaagaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggccc > 1:3018992‑M1/1‑39 (MQ=255) gaagaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaa < 1:2410929‑M1/62‑24 (MQ=255) gaagaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaa < 1:4098612‑M1/57‑19 (MQ=255) aagaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtc > 1:2080761‑M1/1‑38 (MQ=255) aagaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaa < 1:2146577‑M1/55‑18 (MQ=255) aagaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagt > 1:1590862‑M1/1‑38 (MQ=255) aagaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagg < 1:2728213‑M1/41‑4 (MQ=255) agaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATaa > 1:713494/1‑37 (MQ=255) agaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtct > 1:1704391‑M1/1‑37 (MQ=255) agaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtct < 1:4306496‑M1/71‑35 (MQ=255) agaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtct > 1:670953‑M1/1‑37 (MQ=255) agaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacg < 1:3318205‑M1/58‑22 (MQ=255) agaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagt > 1:2524254‑M1/1‑37 (MQ=255) agaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagg > 1:2036784‑M1/1‑37 (MQ=255) gaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaa < 1:2832974‑M1/60‑25 (MQ=255) aaaaaGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtcttt < 1:4153347‑M1/71‑37 (MQ=255) aaaaaGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaa < 1:1410758‑M1/46‑12 (MQ=255) aaaaaGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtcc > 1:3411366‑M1/1‑35 (MQ=255) aaaaaGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACTAAt < 1:2791674/47‑1 (MQ=255) aaaaGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttc > 1:2602923‑M1/1‑34 (MQ=255) aaaaGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaa > 1:726196‑M1/1‑34 (MQ=255) aaaaGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaa < 1:2235698‑M1/45‑12 (MQ=255) aaaaGTGAATGATGTAGACGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttc < 1:1312723‑M1/71‑38 (MQ=255) aaaGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttc > 1:2664029‑M1/1‑33 (MQ=255) aaaGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaag > 1:1154855‑M1/1‑33 (MQ=255) aaaGTGAATGATGTAGCCGTCAAGTTGTCATAAag > 1:304679‑M1/1‑33 (MQ=255) gTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgac > 1:3657852‑M1/1‑30 (MQ=255) gAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCa > 1:1213149/1‑69 (MQ=255) aaTGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactga < 1:4458721‑M1/70‑44 (MQ=255) atgatgTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagc > 1:2746510‑M1/1‑26 (MQ=255) tgatgTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaa > 1:1646239‑M1/1‑25 (MQ=255) gatgTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtct < 1:4251795‑M1/58‑35 (MQ=255) tgTAGCCGTCAAGTTGTCATAAagggtccctaagt > 1:3272891‑M1/1‑22 (MQ=255) tgTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTg < 1:1047655/44‑1 (MQ=255) tgTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTg < 1:68692/44‑1 (MQ=255) gTAGCCGTCAAGTTGTCATAATTGGTAACGAATCa < 1:3214780/35‑1 (MQ=255) tAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACaa < 1:4523342/39‑1 (MQ=255) aGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagcctttcgt > 1:79559‑M1/1‑19 (MQ=255) aGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgac < 1:1672048‑M1/59‑41 (MQ=255) gCCGTCAATTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCa < 1:1265814/70‑1 (MQ=255) ccGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGa < 1:3442208/71‑1 (MQ=255) cGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagcctttcgttt < 1:4183150‑M1/70‑55 (MQ=255) tCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagcctttcgttttat > 1:3717367‑M1/1‑14 (MQ=255) tCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagcctttcgtttt < 1:511449‑M1/69‑56 (MQ=255) tCAAGTTGTCATAAagggtccctaagtctaaaacga < 1:1907105‑M1/36‑23 (MQ=255) cAAGTTGTCATAAagggtccctaagtctaaaacgaaaggccca < 1:1024174‑M1/43‑31 (MQ=255) cAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAggg > 1:3582593/1‑59 (MQ=255) aaGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAAt < 1:1198148/68‑1 (MQ=255) aaGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAATccc > 1:1857388/1‑71 (MQ=255) aGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAATCCCt < 1:3608897/71‑1 (MQ=255) ttGTCATAAagggtccctaagtctaaaacgaaaggcccagtctt < 1:4031107‑M1/44‑36 (MQ=255) tGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttc > 1:924240‑M1/1‑8 (MQ=255) tCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagcctttcgttttatttgaccg < 1:3665679‑M1/70‑65 (MQ=255) cATAATTGGTAACGAATCAGACAATTGACGGCTTGAc > 1:4383113/1‑37 (MQ=255) aTAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagcctt > 1:2285467‑M1/1‑4 (MQ=255) aTAAagggtccctaagtctaaaacgaaaggcccagtctttc > 1:3879987‑M1/1‑4 (MQ=255) aTAAagggtccctaagtctaaaacgaaaggcccagtctttc < 1:3361504‑M1/41‑38 (MQ=255) aaagggtccctaagtctaaaacgaaaggcccagtcttt > 1:1365867‑M1/1‑2 (MQ=255) aaTTGGTAACTAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAATCCCTGCTTCGTc > 1:2689814/1‑70 (MQ=255) aagggtccctaagtctaaaacgaaaggcccagtctttc < 1:4556389‑M1/38‑38 (MQ=255) aTTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAATCCCTGCTTCGTCCa < 1:1019579/71‑1 (MQ=255) aTTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAATCCCTGCTTCGTCCa > 1:1757990/1‑71 (MQ=255) | GGGCCAGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAATCCCTGCTTCGTCCA > W3110S.gb/71195‑71335 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |