| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 71265 | 55 (1.130) | 139 (3.960) +AGGGTCCCTAAGTC |
58/72 | NT | 84.1% | coding (879/879 nt) | araC | DNA‑binding transcriptional dual regulator |
| ? | W3110S.gb | 3464879 = | 18 (0.370) | intergenic (‑255/+46) | murB/rrfB | UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding/5S ribosomal RNA | |||||
Only 100 of 210 total aligned reads displayed.
TTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGCAG > W3110S.gb/3464809‑3464935 | agttccgtgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtct < 1:2715279‑M2/1‑1 (MQ=255) ttccgtgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTaa < 1:1097538‑M2/3‑1 (MQ=255) ttccgtgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTaa < 1:4580571‑M2/3‑1 (MQ=255) ttccgtgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTa > 1:283904‑M2/69‑70 (MQ=255) ccgtgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTaaaa > 1:4430659‑M2/67‑71 (MQ=255) ccgtgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTa > 1:1175954‑M2/67‑68 (MQ=255) ccgtgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTa > 1:1662446‑M2/67‑68 (MQ=255) cgtgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTaaaa < 1:3884539‑M2/5‑1 (MQ=255) cgtgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAAc < 1:3118124‑M2/6‑1 (MQ=255) gtgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAAc > 1:2506134‑M2/65‑70 (MQ=255) gtgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACg < 1:9857‑M2/7‑1 (MQ=255) tgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGa < 1:2942385‑M2/8‑1 (MQ=255) tgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGa < 1:2991150‑M2/8‑1 (MQ=255) ccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGaa < 1:2176695‑M2/9‑1 (MQ=255) ccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGaa < 1:1958466‑M2/9‑1 (MQ=255) ccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGa > 1:3645539‑M2/62‑69 (MQ=255) cggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAg < 1:572591‑M2/11‑1 (MQ=255) gttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGc < 1:562198‑M2/13‑1 (MQ=255) gttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGc > 1:1112164‑M2/59‑71 (MQ=255) gtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGcc > 1:1976078‑M2/56‑69 (MQ=255) tgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtct < 1:3726671‑M2/1‑1 (MQ=255) tgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGa < 1:2511764‑M2/8‑1 (MQ=255) gaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTaaa < 1:4098612‑M2/4‑1 (MQ=255) gaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGaa < 1:2410929‑M2/9‑1 (MQ=255) aagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGaaa > 1:3937098‑M2/53‑62 (MQ=255) agaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACg < 1:3318205‑M2/7‑1 (MQ=255) agaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCt > 1:1889800‑M2/52‑71 (MQ=255) agaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCt < 1:4306496‑M2/20‑1 (MQ=255) agaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCt > 1:1704391‑M2/52‑71 (MQ=255) gaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCtt < 1:44724‑M2/21‑1 (MQ=255) aaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACg < 1:1590768‑M2/7‑1 (MQ=255) ccGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTc < 1:1231570/71‑1 (MQ=32) aaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTaaaa > 1:3691046‑M2/49‑53 (MQ=255) aaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGaaa > 1:3658723‑M2/49‑58 (MQ=255) aaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGaa > 1:726196‑M2/49‑57 (MQ=255) aaaagtgaatgatgtagacgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTc < 1:1312723‑M2/23‑1 (MQ=255) aaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTc > 1:22331‑M2/48‑70 (MQ=255) aaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTc > 1:2664029‑M2/48‑70 (MQ=255) aaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCg < 1:259884‑M2/24‑1 (MQ=255) aagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGc > 1:329797‑M2/47‑59 (MQ=255) aagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGa > 1:1379384‑M2/47‑71 (MQ=255) aagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGa < 1:683911‑M2/25‑1 (MQ=255) agtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGaaa > 1:4261082‑M2/46‑55 (MQ=255) agtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGAc > 1:233742‑M2/46‑71 (MQ=255) tgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGaa > 1:592928‑M2/44‑52 (MQ=255) tgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGa < 1:213086‑M2/8‑1 (MQ=255) aatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGa < 1:4458721‑M2/29‑1 (MQ=255) atgatgtagccgtcaagttgtcataaagggtccctaagtcTa > 1:2767416‑M2/41‑42 (MQ=255) atgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGccc > 1:4384572‑M2/41‑55 (MQ=255) atgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGc > 1:2746510‑M2/41‑71 (MQ=255) atgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGc < 1:2822425‑M2/31‑1 (MQ=255) tgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGaaa > 1:1646239‑M2/40‑49 (MQ=255) atgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCtt > 1:54150‑M2/38‑71 (MQ=255) atgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCtt > 1:3005284‑M2/38‑71 (MQ=255) tgtagccgtcaagttgtcataaagggtccctaagtcTaaaa > 1:3488674‑M2/37‑41 (MQ=255) tgtagccgtcaagttgtcataaagggtccctaagtcTAAAACg < 1:4149245‑M2/7‑1 (MQ=255) tCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCttt > 1:3746832/1‑71 (MQ=34) tagccgtcaagttgtcataaagggtccctaagtcTAAAACAAAAGGCCCAGTCTTTCGa > 1:2311366‑M2/35‑59 (MQ=255) agccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGAc < 1:1672048‑M2/26‑1 (MQ=255) agccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGt > 1:79559‑M2/34‑71 (MQ=255) gccgtcaagttgtcatgaagggtccctaagtcTAAAACGAAAGG‑CCAGTCTTTCGACTGAGCCTTTCGttt > 1:2369957‑M2/33‑71 (MQ=255) gccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGtt < 1:717724‑M2/39‑1 (MQ=255) cTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGt < 1:351269/69‑1 (MQ=35) cgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGttt < 1:4183150‑M2/40‑1 (MQ=255) tcaagttgtcataaagggtccctaagtcTAAAACg < 1:653595‑M2/7‑1 (MQ=255) tcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGtttt < 1:511449‑M2/41‑1 (MQ=255) tcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTAt > 1:814978‑M2/29‑71 (MQ=255) aGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCttt > 1:1755462/1‑50 (MQ=32) aagttgtcataaagggtccctaagtcTAAAACGaaa > 1:1150540‑M2/27‑36 (MQ=255) aagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGa > 1:2063955‑M2/27‑51 (MQ=255) aagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTc > 1:1688882‑M2/27‑62 (MQ=255) aagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTAttt > 1:1027093‑M2/27‑71 (MQ=255) agttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTg < 1:3060704‑M2/46‑1 (MQ=255) gttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTAttt < 1:1187312‑M2/45‑1 (MQ=255) ttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCtt < 1:4031107‑M2/21‑1 (MQ=255) ttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCg < 1:3401366‑M2/24‑1 (MQ=255) tgtcataaagggtccctaagtcTAAAACGAAAGGccc > 1:267821‑M2/23‑37 (MQ=255) tgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTc > 1:924240‑M2/23‑45 (MQ=255) gtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATttgaccg > 1:2490708‑M2/22‑68 (MQ=255) tcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATttgaccg < 1:3665679‑M2/50‑4 (MQ=255) tcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATttgaccg < 1:4129495‑M2/50‑4 (MQ=255) ataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTc > 1:3879987‑M2/19‑41 (MQ=255) ataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTc < 1:3361504‑M2/23‑1 (MQ=255) ataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCtt < 1:2542265‑M2/34‑1 (MQ=255) ataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCtt > 1:2285467‑M2/19‑52 (MQ=255) taaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTgac > 1:1343998‑M2/18‑64 (MQ=255) cACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTgg > 1:4235046/1‑71 (MQ=34) aaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCttt > 1:3591026‑M2/17‑51 (MQ=255) aCCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGa < 1:3444403/45‑1 (MQ=38) aCCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGa < 1:1818049/45‑1 (MQ=38) ccGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTc < 1:763180/38‑1 (MQ=37) aagggtccctaagtcTAAAACGAAAGGCCCAGTCtt > 1:3974930‑M2/16‑36 (MQ=255) aagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTc < 1:4556389‑M2/23‑1 (MQ=255) aagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGa > 1:1206937‑M2/16‑40 (MQ=255) gACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGa > 1:3147014/1‑42 (MQ=38) cctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGa < 1:3992492‑M2/29‑1 (MQ=255) cctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTAtt < 1:1155160‑M2/44‑1 (MQ=255) taagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCt > 1:1477940‑M2/7‑39 (MQ=255) gATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCtt < 1:1004771/36‑1 (MQ=40) tAAAACGAAAGGCCCAGTCTATCGACTGAGCCTTTCGTTTTa < 1:1919271/42‑1 (MQ=255) | TTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGCAG > W3110S.gb/3464809‑3464935 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |