New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	W3110S.gb	566000 =	NA (NA)	68 (1.370)	32/98	NT	100%	intergenic (+90/‑56)	ybcD/insE	DLP12 prophage region; ECK0532:JW0527:b4508; predicted replication protein fragment/IS3 element protein InsE
	?	W3110S.gb	= 576913	0 (0.000)					coding (78/498 nt)	ybcS	predicted lysozyme

ATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGG  >  W3110S.gb/565932‑566056                                                                     |                                                         aTTACCTGGGGACTCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTg                                                         <  1:713371/70‑1 (MQ=255)      cTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATATGATCTTa                                                   >  1:1642528/1‑71 (MQ=255)         gggACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTAc                                                  <  1:1377016/69‑1 (MQ=255)              gCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCaa                                           <  1:2693016/71‑1 (MQ=255)               cATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAAt                                          <  1:1123361/71‑1 (MQ=255)                aTAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGa                                                        <  1:4713752/56‑1 (MQ=255)                aTAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGa                                                        <  1:3118948/56‑1 (MQ=255)                 tAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTg                                                         <  1:4411118/54‑1 (MQ=255)                 tAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAg                                        >  1:887788/1‑71 (MQ=255)                 tAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAg                                        <  1:4456650/71‑1 (MQ=255)                   agcgCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTg                                      >  1:1551638/4‑71 (MQ=255)                   agagCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTg                                      >  1:3376605/1‑71 (MQ=255)                   agagCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTg                                      >  1:3880666/1‑71 (MQ=255)                   agagCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTg                                      >  1:3909331/1‑71 (MQ=255)                   agagCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTg                                      >  1:4213396/1‑71 (MQ=255)                   agagCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTg                                      >  1:4578348/1‑71 (MQ=255)                   agagCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTg                                      >  1:4754797/1‑71 (MQ=255)                      gCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTAccc                                                >  1:127315/1‑58 (MQ=255)                      gCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAAt                                          <  1:309106/64‑1 (MQ=255)                      gCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGa                                    >  1:3141362/1‑70 (MQ=255)                         tCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAg                                        >  1:4415761/1‑63 (MQ=255)                         tCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACAcg                                >  1:2025316/1‑71 (MQ=255)                          cTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAAt                                          <  1:2365887/60‑1 (MQ=255)                          cTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACAcgc                               >  1:3142237/1‑71 (MQ=255)                           tgtgCACAGGACGTTGCAGCGGTAACAGGCGCAACCGTAATCTGAt                                                       <  1:1853937/46‑1 (MQ=255)                             tgCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTAcc                                                 <  1:2443916/50‑1 (MQ=255)                             tgCACAGGACGTTGCCGCGCTAACAGGCGCAACCGTAATCT‑ATCTTACCCAGCAATAGTGGACACGCGGCt                           <  1:4704026/71‑1 (MQ=37)                               cacaGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCt                           >  1:4364095/1‑70 (MQ=255)                               cacaGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCt                           <  1:178364/70‑1 (MQ=255)                                acaGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTaa                         <  1:3208710/71‑1 (MQ=255)                                  aGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTg                                                         <  1:993691/37‑1 (MQ=255)                                  aGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTg                                                         <  1:220959/37‑1 (MQ=255)                                  aGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGt                       <  1:1197304/71‑1 (MQ=255)                                    gACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGt                       >  1:753632/1‑69 (MQ=255)                                    gACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGa                     <  1:3528274/71‑1 (MQ=255)                                      cGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCaa                                           >  1:1720054/1‑47 (MQ=255)                                      cGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATa                                         <  1:3432370/49‑1 (MQ=255)                                      cGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATa                                         <  1:2685655/49‑1 (MQ=255)                                      cGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATa                                         <  1:4382992/49‑1 (MQ=255)                                       gTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCaa                                           <  1:3726404/46‑1 (MQ=255)                                        ttGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTAcc                                                 <  1:1420160/39‑1 (MQ=255)                                        ttGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTg                                      <  1:3258368/50‑1 (MQ=255)                                         tGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATa                                         >  1:194383/1‑46 (MQ=255)                                         tGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaaa                >  1:2819817/1‑71 (MQ=255)                                          gCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCa                                               >  1:328318/1‑39 (MQ=255)                                          gCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCa                                               >  1:479147/1‑39 (MQ=255)                                            cgcgGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGT‑‑ACACGCGGCTAAGTGAGTa                  <  1:74525/64‑1 (MQ=21)                                               ggTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActct            >  1:3962876/1‑69 (MQ=255)                                                 tAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAg                                        >  1:2916535/1‑39 (MQ=255)                                                 tAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagt        >  1:713170/1‑71 (MQ=255)                                                   aCAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTa                          >  1:2564735/1‑51 (MQ=255)                                                    cAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtcag     <  1:105905/71‑1 (MQ=255)                                                    cAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagt        >  1:1678193/1‑68 (MQ=255)                                                    cAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagt        >  1:3610648/1‑68 (MQ=255)                                                       gcgcAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAgg  >  1:4471287/1‑71 (MQ=255)                                                          cAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtcag     <  1:3220695/65‑1 (MQ=39)                                                            aCCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtca      >  1:44388/1‑62 (MQ=35)                                                             ccGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGt                       <  1:2467777/44‑1 (MQ=35)                                                                     |                                                         ATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGG  >  W3110S.gb/565932‑566056

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.