| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 1209382 | 21 (0.420) | 14 (0.420) | 8/66 | NT | 50.8% | coding (305/630 nt) | ycfK | hypothetical protein |
| ? | W3110S.gb | = 1211179 | 13 (0.390) | pseudogene (54/537 nt) | stfE | ECK1143:JW5172:b1157; e14 prophage region; predicted side tail fiber protein fragment | |||||
TCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGT > W3110S.gb/1209314‑1209452 | tCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGc > 1:4584476‑M1/1‑69 (MQ=255) cGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctct > 1:3728044‑M1/1‑67 (MQ=255) aaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCa < 1:3178792‑M1/20‑1 (MQ=255) aaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCa < 1:3015776‑M1/20‑1 (MQ=255) aaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCa < 1:2385132‑M1/20‑1 (MQ=255) aaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCa < 1:4255563‑M1/20‑1 (MQ=255) tttGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgc < 1:768403‑M1/71‑7 (MQ=255) ggCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcat < 1:1211504‑M1/70‑9 (MQ=255) ggCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcat < 1:419622‑M1/70‑9 (MQ=255) gCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTc < 1:2407016/71‑1 (MQ=255) caggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTc > 1:4745693‑M1/46‑71 (MQ=255) caggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTc > 1:3102376‑M1/46‑71 (MQ=255) gaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAAc > 1:2943979‑M1/43‑66 (MQ=255) atgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATgc > 1:1610664‑M1/41‑71 (MQ=255) tCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgtt < 1:1533363‑M1/71‑17 (MQ=255) tCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgtt < 1:4429167‑M1/71‑17 (MQ=255) atgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCa < 1:186027‑M1/27‑1 (MQ=255) atgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATgcagc > 1:1858611‑M1/38‑71 (MQ=255) atgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATgcagc > 1:1517003‑M1/38‑71 (MQ=255) atgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATgcagc > 1:3772896‑M1/38‑71 (MQ=255) aaaTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttg < 1:591499‑M1/70‑18 (MQ=255) aaaTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATgcag > 1:2055852/1‑70 (MQ=255) tgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATgcagca > 1:2175179‑M1/37‑71 (MQ=255) ccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCaa < 1:471858‑M1/28‑1 (MQ=255) ccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCaa < 1:4210052‑M1/28‑1 (MQ=255) tttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACgg > 1:2100630‑M1/32‑70 (MQ=255) ttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATgca < 1:3056678‑M1/32‑1 (MQ=255) gttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACAt < 1:2937974‑M1/45‑1 (MQ=255) gttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACAt < 1:2932275‑M1/45‑1 (MQ=255) ttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATgcagc > 1:1589001‑M1/24‑57 (MQ=255) ttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTa > 1:3050635‑M1/24‑70 (MQ=255) tgtgCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctg < 1:766948‑M1/44‑6 (MQ=255) gtgCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAg > 1:258603/1‑70 (MQ=255) gtgCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAg > 1:1720121/1‑70 (MQ=255) tgCAAACGGCTCTCGAAAACCTTGGTTTGGGTGAAGGAGCAAAAATCAATGCAGCAACGGCTACATTAGGa > 1:2926545/1‑71 (MQ=255) tgCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtgg > 1:423050‑M1/1‑37 (MQ=255) tgCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCaa > 1:1477378/1‑57 (MQ=255) tgCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCaa > 1:30286/1‑57 (MQ=255) atttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGa < 1:3527877‑M1/50‑1 (MQ=255) tttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATgcagc > 1:1852954‑M1/21‑54 (MQ=255) ttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAg > 1:1573217‑M1/20‑67 (MQ=255) cAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACg > 1:4296457/1‑71 (MQ=255) tcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCaa < 1:3405247‑M1/36‑1 (MQ=255) tcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCaa < 1:4051849‑M1/36‑1 (MQ=255) tcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACa < 1:4114449‑M1/44‑1 (MQ=255) cttcattttcataaacgTTGGTTTGGGAGAAGGAGCaaa > 1:1787399‑M1/18‑39 (MQ=255) cGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCa > 1:1275109/1‑69 (MQ=255) cattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCg < 1:520211‑M1/57‑1 (MQ=255) gCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagc < 1:1963367‑M1/71‑43 (MQ=255) gCTCTCGAAAACCTTGGGTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCgg < 1:1710236/71‑1 (MQ=255) tctcGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgtt < 1:4523382‑M1/43‑17 (MQ=255) tctcGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgtt < 1:1861832‑M1/43‑17 (MQ=255) ctcGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCaa > 1:925304/1‑46 (MQ=255) tcGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAg < 1:2778587/57‑1 (MQ=255) tcGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAg < 1:3782846/57‑1 (MQ=255) gAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagcca > 1:323807‑M1/1‑23 (MQ=255) gAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagcca > 1:2514510‑M1/1‑23 (MQ=255) gAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccg > 1:1067561‑M1/1‑23 (MQ=255) gAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGa > 1:833485/1‑57 (MQ=255) gAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGttt < 1:4664220/68‑1 (MQ=255) gAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCa > 1:1281985/1‑70 (MQ=255) gAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCa < 1:4431416/70‑1 (MQ=255) gAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCa < 1:1452204/70‑1 (MQ=255) aaaaCCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttcc < 1:2712627‑M1/52‑31 (MQ=255) aacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGc < 1:3142140‑M1/67‑1 (MQ=255) acgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGc < 1:1813662‑M1/67‑1 (MQ=255) aCCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCt < 1:653344/71‑1 (MQ=255) ccTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCta < 1:4189731/71‑1 (MQ=255) cTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTc < 1:3439455/63‑1 (MQ=255) gTTTGGGAGAAGGctctgcattacctgttggtgtcccggttcc < 1:732278‑M1/43‑31 (MQ=255) tGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctg > 1:1221746‑M1/1‑10 (MQ=255) TGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGttt > 1:3705295‑M1/1‑55 (MQ=255) gggAGAAGGcgctgcattacctgttggtgtcccggttccgtggcctgcagccactccgccaacaggc < 1:2347776‑M1/67‑59 (MQ=255) GGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGTTTa < 1:2478641‑M1/71‑1 (MQ=255) GGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTa < 1:4280664‑M1/71‑1 (MQ=255) GGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTAt > 1:661638‑M1/1‑71 (MQ=255) GGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTAt > 1:528198‑M1/1‑71 (MQ=255) GGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTAt > 1:2983373‑M1/1‑71 (MQ=255) GGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTAt > 1:428721‑M1/1‑71 (MQ=255) GGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTAt > 1:1463315‑M1/1‑71 (MQ=255) GAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTAt < 1:414611‑M1/70‑1 (MQ=255) GAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTAt < 1:2674340‑M1/70‑1 (MQ=255) GAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTAt < 1:1316161‑M1/70‑1 (MQ=255) GAGAAGGACCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATg > 1:1982564‑M1/1‑71 (MQ=255) agaAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctga < 1:1221845‑M1/71‑66 (MQ=255) AAGGAGCAAAACTCAATGCAGCAACGGCTACATTAg > 1:2457021‑M1/1‑36 (MQ=255) AAGGAGCAAAACTCAATGCAGCAACGGCTACATTAg > 1:1143907‑M1/1‑36 (MQ=255) gctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgc < 1:534223‑M1/71‑71 (MQ=255) gctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgc < 1:1521613‑M1/71‑71 (MQ=255) | TCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGT > W3110S.gb/1209314‑1209452 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |