| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 1209382 | 21 (0.420) | 14 (0.420) | 8/66 | NT | 50.8% | coding (305/630 nt) | ycfK | hypothetical protein |
| ? | W3110S.gb | = 1211179 | 13 (0.390) | pseudogene (54/537 nt) | stfE | ECK1143:JW5172:b1157; e14 prophage region; predicted side tail fiber protein fragment | |||||
GCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACC > W3110S.gb/1211110‑1211248 | gCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGc < 1:534223‑M2/71‑2 (MQ=255)gCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGc < 1:1521613‑M2/71‑2 (MQ=255) tCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttct < 1:1221845‑M2/71‑7 (MQ=255) cagccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctccca > 1:1221746‑M2/1‑60 (MQ=255) gccTGTTGGCGGAGTGGCTGCAGGCCACGGAACCGGGACACCAACAGGTAATGCAGCGccttctccc < 1:2347776‑M2/67‑10 (MQ=255) gTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGaa < 1:1924630/71‑1 (MQ=255) tGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttc > 1:323807‑M2/1‑44 (MQ=255) tGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttc > 1:2514510‑M2/1‑44 (MQ=255) tGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGaa > 1:2731539/1‑70 (MQ=255) gCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagc < 1:1963367‑M2/71‑30 (MQ=255) gAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATg > 1:1803179/1‑69 (MQ=255) gCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGaaa < 1:3195527/71‑1 (MQ=255) ccACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgca > 1:423050‑M2/1‑34 (MQ=255) ccACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGa > 1:1394742/1‑59 (MQ=255) cGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttc > 1:1067561‑M2/1‑31 (MQ=255) ggAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggtttt < 1:2712627‑M2/52‑23 (MQ=255) ggAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaac < 1:732278‑M2/43‑14 (MQ=255) gggACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAg > 1:3471706/1‑67 (MQ=255) gggACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCaaa < 1:487096/71‑1 (MQ=255) acacCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCa < 1:2443159/66‑1 (MQ=255) ccAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGcat < 1:4409995/71‑1 (MQ=255) cAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgattt < 1:591499‑M2/70‑54 (MQ=255) aaCAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttga < 1:1533363‑M2/71‑56 (MQ=255) aaCAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttga < 1:4429167‑M2/71‑56 (MQ=255) aaCAGGTAATGCAGAGccttctcccaaaccaaggttttcgaga < 1:1861832‑M2/43‑28 (MQ=255) aaCAGGTAATGCAGAGccttctcccaaaccaaggttttcgaga < 1:4523382‑M2/43‑28 (MQ=255) aaCAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGcatca > 1:695504/1‑71 (MQ=255) tAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATgaag < 1:131927/43‑1 (MQ=255) aTGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgcc < 1:419622‑M2/70‑63 (MQ=255) aTGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgcc < 1:1211504‑M2/70‑63 (MQ=255) tGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATgaag < 1:2729495/40‑1 (MQ=255) tGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAAt < 1:2710117/44‑1 (MQ=255) gCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaa < 1:768403‑M2/71‑66 (MQ=255) cAGAGccttctcccaaaccaaggttttcgagagccgtttgcaca < 1:766948‑M2/44‑40 (MQ=255) cAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCttt > 1:2325098/1‑70 (MQ=255) agagccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacg > 1:3728044‑M2/1‑4 (MQ=255) gccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacgga > 1:4584476‑M2/1‑1 (MQ=255) | GCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACC > W3110S.gb/1211110‑1211248 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |