| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2018583 | 5 (0.100) | 41 (0.860) | 27/94 | NT | 89.5% | coding (579/687 nt) | fliH | flagellar biosynthesis protein |
| ? | W3110S.gb | = 2521059 | NA (NA) | intergenic (+170/+30) | insL/yfeA | predicted transposase/predicted diguanylate cyclase | |||||
Only 100 of 121 total aligned reads displayed.
GCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGCCACTCGCTGGC > W3110S.gb/2018514‑2018653 | catcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCAccc < 1:2459867‑M1/14‑1 (MQ=255) cAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCat < 1:2593099‑M1/71‑3 (MQ=255) tcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTc > 1:1952908‑M1/56‑71 (MQ=255) cGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataag < 1:4758122‑M1/71‑6 (MQ=255) tgtgGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagc > 1:1112762‑M1/1‑64 (MQ=255) cacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATc > 1:469229‑M1/52‑71 (MQ=255) cacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATc > 1:39967‑M1/52‑71 (MQ=255) tgGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgct < 1:3443117‑M1/71‑10 (MQ=255) gatgatATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaa > 1:2923238‑M1/1‑60 (MQ=255) gatgatATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgcta < 1:1549131‑M1/70‑11 (MQ=255) gatgatATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcg > 1:734056‑M1/1‑60 (MQ=255) taaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTggc < 1:3196993‑M1/25‑1 (MQ=255) aaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTggcg < 1:3047644‑M1/26‑1 (MQ=255) aaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTggc > 1:3833977‑M1/46‑70 (MQ=255) gatATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaact > 1:1361465‑M1/1‑57 (MQ=255) gatATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaact > 1:4088888‑M1/1‑57 (MQ=255) catatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTg < 1:2458857‑M1/30‑1 (MQ=255) atGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGTTCCCACCataagcgctaacttaag > 1:1589799‑M1/1‑54 (MQ=255) atGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataa > 1:3540423‑M1/1‑54 (MQ=255) tatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTa > 1:85920‑M1/40‑71 (MQ=255) gCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaaggg > 1:72487‑M1/1‑52 (MQ=255) atcaggcgtaataccacaacccttaagttagcgcttatGTGCGATCCAACCCTCCATCCTGGCGGCTGTa < 1:2606853‑M1/32‑1 (MQ=255) ccTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagctctaacttaagggttgaaccatct < 1:4681923‑M1/71‑31 (MQ=255) ccTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatct > 1:4382810‑M1/1‑41 (MQ=255) ataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTggcggc < 1:2946730‑M1/28‑1 (MQ=255) ataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTccgcc < 1:2168500‑M1/43‑1 (MQ=255) ataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTccgcc > 1:253724‑M1/29‑71 (MQ=255) ataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTccgcc < 1:3603714‑M1/43‑1 (MQ=255) taccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTa > 1:3107531‑M1/28‑59 (MQ=255) taccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTccgcc > 1:1375088‑M1/28‑70 (MQ=255) accacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGa < 1:3489491‑M1/45‑1 (MQ=255) tAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctg > 1:2300624‑M1/1‑38 (MQ=255) cacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGAt < 1:2575307‑M1/46‑1 (MQ=255) cacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATg > 1:1480944‑M1/25‑71 (MQ=255) aaGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcggtaacttaagggttgaaccatctg > 1:4789399‑M1/1‑37 (MQ=255) aaGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaa > 1:2895185‑M1/1‑37 (MQ=255) acaacccttaagttagcgcttatGGGCGATCCCACCCt < 1:1344536‑M1/15‑1 (MQ=255) acaacccttaagttagcgcttatGGGCGATCCCACCCTc < 1:2644577‑M1/16‑1 (MQ=255) acaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTaaa < 1:1741549‑M1/34‑1 (MQ=255) acaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATg > 1:516552‑M1/24‑70 (MQ=255) aGTTTGCATGGCTTGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaag < 1:4155919‑M1/70‑35 (MQ=255) aGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaaga < 1:2414167‑M1/71‑36 (MQ=255) aGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaaga < 1:1768040‑M1/71‑36 (MQ=255) aGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaaga < 1:2869994‑M1/71‑36 (MQ=255) aGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaag < 1:1261285‑M1/70‑35 (MQ=255) acccttaagttagcgcttatGGGCGATCCCACCCTcc > 1:2265723‑M1/21‑37 (MQ=255) acccttaagttagcgcttatGGGCGATCCCACCCTc > 1:2509263‑M1/21‑36 (MQ=255) gCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgc < 1:3265967‑M1/70‑40 (MQ=255) gCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgc < 1:3789634‑M1/70‑40 (MQ=255) cttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTccgcc > 1:4004857‑M1/18‑60 (MQ=255) aTGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgcga > 1:3480685‑M1/1‑29 (MQ=255) ggctggcGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgcgacgc > 1:4742891‑M1/1‑27 (MQ=255) ggctggcGCTTGCGGGGCGATCCCACCataagcgctaactt < 1:3384371‑M1/41‑15 (MQ=255) aagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGAtct < 1:2678479‑M1/57‑1 (MQ=255) aagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGAtct < 1:358424‑M1/57‑1 (MQ=255) agttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGAtctc < 1:109372‑M1/58‑1 (MQ=255) agttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGAtctc > 1:1750516‑M1/14‑71 (MQ=255) agttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGAtctc > 1:2496103‑M1/14‑71 (MQ=255) tagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGAc < 1:3363401‑M1/61‑1 (MQ=255) agcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTaaa < 1:801066‑M1/34‑1 (MQ=255) agcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTccgccg < 1:2866335‑M1/44‑1 (MQ=255) agagcttatGGGCGATCCCACCCTCCATCATGGCGGCTGTAAAgtctca < 1:2871712‑M1/40‑2 (MQ=255) cgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCAGATGAAGGCGATCTCGACgca > 1:3203798‑M1/8‑70 (MQ=255) cGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcg < 1:465315‑M1/71‑57 (MQ=255) atGGGCGATCCCACCCTCCATCCTGTCGGCTGTAAAGTCTCCGCCGa < 1:1450495‑M1/45‑1 (MQ=255) atGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAgtgt < 1:758387‑M1/69‑1 (MQ=255) atGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAgtg > 1:1332571‑M1/3‑70 (MQ=255) tGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTc > 1:756389‑M1/2‑71 (MQ=255) tgcGATCCCACCataagcgctaacttaagggttgaaccatctgaag < 1:205762‑M1/45‑35 (MQ=255) ggCGATCCCACCataagcgctaacgtaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgtt > 1:2649668‑M1/1‑12 (MQ=255) GCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGcc > 1:610603‑M1/1‑71 (MQ=255) caatcCCACCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgtt > 1:1292422‑M1/3‑10 (MQ=255) gATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGaa > 1:4716536/1‑45 (MQ=255) aTCCCACCataagcgctaacttaaggtttgaaccatctgaagaatgcgacgcct < 1:264349‑M1/54‑47 (MQ=255) aTCCCACCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgtt < 1:146910‑M1/66‑59 (MQ=255) aTCCCACCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcct < 1:3921329‑M1/54‑47 (MQ=255) aTCCCACCataagcgctaacttaagggttgaaccatctgaagaatgcgacccctcggtgcctcgttaa < 1:4014439‑M1/68‑61 (MQ=255) tCCCACCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagac < 1:3450138‑M1/70‑64 (MQ=255) cccACCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacga > 1:2058183‑M1/1‑6 (MQ=255) cccACCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacga > 1:4419891‑M1/1‑6 (MQ=255) cccACCataagcgctaacttaagggttgaaccatctgaagaa > 1:1050937‑M1/1‑6 (MQ=255) cccACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGAc > 1:2513605/1‑54 (MQ=255) cccACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGCCACTCg > 1:754067/1‑71 (MQ=255) cccACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGT‑‑CCACTCGCt > 1:4446090/1‑71 (MQ=255) ccaccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcgg > 1:853339‑M1/1‑5 (MQ=255) caccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgat < 1:4261415‑M1/70‑67 (MQ=255) cACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGCCACTCGCt > 1:1426063/1‑71 (MQ=255) ccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcc < 1:3343206‑M1/71‑70 (MQ=255) ccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcc > 1:2254885‑M1/1‑2 (MQ=255) ccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcc < 1:2844327‑M1/71‑70 (MQ=255) ccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgc < 1:3215526‑M1/70‑69 (MQ=255) ccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacga > 1:2363444‑M1/1‑2 (MQ=255) ccataagcgctaacttaagggttgaaccatctgaagaa > 1:1347216‑M1/1‑2 (MQ=255) ccataagcgctaacttaagggttgaaccatctgaagaa > 1:4566021‑M1/1‑2 (MQ=255) ccataagcgctaacttaagggttgaaccatctgaagaa > 1:915939‑M1/1‑2 (MQ=255) ccataagcgctaacttaagggttgaaccatctgaa > 1:2236896‑M1/1‑2 (MQ=255) cataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcct > 1:4017750‑M1/1‑1 (MQ=255) cataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacga > 1:1770486‑M1/1‑1 (MQ=255) cataagcgctaacttaagggttgaaccatctgaagaatgcgacg > 1:2245989‑M1/1‑1 (MQ=255) cataagcgctaacttaagggttgaaccatctgaag < 1:3810711‑M1/35‑35 (MQ=255) | GCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGCCACTCGCTGGC > W3110S.gb/2018514‑2018653 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |