| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2018583 | 5 (0.100) | 41 (0.860) | 27/94 | NT | 89.5% | coding (579/687 nt) | fliH | flagellar biosynthesis protein |
| ? | W3110S.gb | = 2521059 | NA (NA) | intergenic (+170/+30) | insL/yfeA | predicted transposase/predicted diguanylate cyclase | |||||
GTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATC > W3110S.gb/2520997‑2521119 | gTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAAt > 1:649460/1‑71 (MQ=34) aaCGAGGCACCGAGGCTTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTcccc > 1:2051241/1‑71 (MQ=255) aaCGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTcccc > 1:701132/1‑71 (MQ=39) ggCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGttt > 1:4324219/1‑71 (MQ=255) aCCGAGGCGTCGCATTCTTCATATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGtttttt < 1:2696413/71‑1 (MQ=255) ccGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATaa > 1:277008/1‑56 (MQ=33) ccGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGtttt < 1:1426646/68‑1 (MQ=255) gAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTAc > 1:3969586/1‑71 (MQ=255) gTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTccc < 1:2858225/54‑1 (MQ=255) tCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTcccc < 1:4076045/54‑1 (MQ=255) tCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGt < 1:1584362/71‑1 (MQ=255) tCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGt < 1:3543982/71‑1 (MQ=255) ttcttcAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGtttttt < 1:4550229/57‑1 (MQ=255) cttcAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGtttttt > 1:3126752/1‑55 (MQ=255) cttcAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAg > 1:95407/1‑71 (MQ=255) cttcAGATGGTTCAAACCTTAAGTTAGCGCTTATGGGATa > 1:3214148/1‑40 (MQ=255) tcAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTcc > 1:115892/1‑43 (MQ=255) tcAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAg > 1:110213/1‑69 (MQ=255) cAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCt < 1:3727945/70‑1 (MQ=255) gATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAAt < 1:582428/71‑1 (MQ=255) ggTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATc < 1:631233/61‑1 (MQ=255) cTTAAGTTAGCGCTTATGGGATAATTCCCCGGtttttt < 1:4475096/38‑1 (MQ=255) ttAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGc < 1:4473446/64‑1 (MQ=255) tAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATc < 1:574986/50‑1 (MQ=255) tAGCGCTTATGCGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATc > 1:3866903/1‑70 (MQ=255) | GTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATC > W3110S.gb/2520997‑2521119 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |