| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 274373 | NA (NA) | 30 (1.100) | 19/98 | NT | 100% | intergenic (‑32/‑176) | insH/mmuP | IS5 transposase and trans‑activator/predicted S‑methylmethionine transporter |
| ? | W3110S.gb | 576000 = | 0 (0.000) | pseudogene (109/1128 nt) | nmpC | DLP12 prophage region; ECK0544:JW5078:b0553; truncated outer membrane porin | |||||
TGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATT > W3110S.gb/274308‑274432 | tgaACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAgg > 1:2224214/1‑71 (MQ=38) aaCCCTGTTCTATGCCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCg > 1:567062/1‑71 (MQ=255) aCCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGt < 1:2569826/71‑1 (MQ=255) aCCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGt > 1:1967329/1‑71 (MQ=255) cTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTAt < 1:1502409/71‑1 (MQ=255) cTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTAt < 1:1944351/71‑1 (MQ=255) aTGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGa > 1:2637887/1‑56 (MQ=35) aTGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTgg > 1:1807850/1‑71 (MQ=255) tGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTggc < 1:699063/71‑1 (MQ=255) tGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAgg > 1:991657/1‑47 (MQ=255) tGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAgg > 1:2557527/1‑47 (MQ=255) tGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTgg > 1:1741998/1‑60 (MQ=255) aCAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGtt < 1:366477/49‑1 (MQ=255) aCAAACATGATCTCATATCAGGGACTTGATCGCACCTTCCGGAGGCGtt < 1:1339604/49‑1 (MQ=255) aaaCATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTa > 1:2215846/1‑48 (MQ=255) aaaCATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTa > 1:2255772/1‑48 (MQ=255) aaaCATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTa > 1:2444190/1‑48 (MQ=255) cATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGa > 1:1296910/1‑48 (MQ=255) atatCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGc > 1:671401/1‑41 (MQ=255) atatCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGattatt < 1:14119/68‑1 (MQ=255) atCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTgg > 1:2317498/1‑42 (MQ=255) tCAGGTACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTggcgg < 1:46397/44‑1 (MQ=255) gTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGAttatta > 1:2040621/1‑56 (MQ=255) ttCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGattatt < 1:1601091/54‑1 (MQ=255) ttCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTAtt < 1:699916/71‑1 (MQ=255) ttCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTAtt < 1:2215066/71‑1 (MQ=255) cGCACCTTCCGGAGGCGTTATGAGCTGGAGGCCCTTTTTGTAt > 1:2308398/1‑43 (MQ=255) aCCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGt > 1:299134/1‑38 (MQ=255) aCCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGatta > 1:1072489/1‑47 (MQ=255) ccTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGt < 1:259720/37‑1 (MQ=255) cTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTg < 1:1858172/35‑1 (MQ=255) cTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTg < 1:2381692/35‑1 (MQ=255) ttCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCt < 1:2514085/39‑1 (MQ=255) tCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGa > 1:2481013/1‑40 (MQ=255) ccGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGatta > 1:2391807/1‑42 (MQ=255) | TGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATT > W3110S.gb/274308‑274432 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |