| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 274373 | NA (NA) | 30 (1.100) | 19/98 | NT | 100% | intergenic (‑32/‑176) | insH/mmuP | IS5 transposase and trans‑activator/predicted S‑methylmethionine transporter |
| ? | W3110S.gb | 576000 = | 0 (0.000) | pseudogene (109/1128 nt) | nmpC | DLP12 prophage region; ECK0544:JW5078:b0553; truncated outer membrane porin | |||||
ACTTTCCCGTACAGATCCAGCTTGTTACTGTCTTTATTATAAATTTCAGCTGCCTGAGCAGACATCGCCATTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTTTGAAC > W3110S.gb/575930‑576068 | atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct < 1:1106983‑M2/1‑1 (MQ=255)atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:2463531‑M2/71‑71 (MQ=255)atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct < 1:972151‑M2/1‑1 (MQ=255)atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:1859782‑M2/71‑71 (MQ=255)atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:579321‑M2/71‑71 (MQ=255) tgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:230819‑M2/2‑1 (MQ=255) tgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:2447583‑M2/2‑1 (MQ=255) tgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:2136194‑M2/2‑1 (MQ=255) tgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:2489531‑M2/2‑1 (MQ=255) gatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt > 1:1571514‑M2/69‑70 (MQ=255) gatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:1044859‑M2/69‑69 (MQ=255) gatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:1451527‑M2/69‑69 (MQ=255) atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTa < 1:1760433‑M2/3‑1 (MQ=255) atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg < 1:1552787‑M2/4‑1 (MQ=255) atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg < 1:709540‑M2/4‑1 (MQ=255) atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg < 1:700554‑M2/4‑1 (MQ=255) atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg > 1:640341‑M2/68‑71 (MQ=255) atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg > 1:386020‑M2/68‑71 (MQ=255) tgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTa > 1:1785471‑M2/67‑69 (MQ=255) aaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTAc > 1:2010748‑M2/65‑71 (MQ=255) accctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACt > 1:762724‑M2/64‑71 (MQ=255) ctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg < 1:2498368‑M2/4‑1 (MQ=255) gttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:1296574‑M2/2‑1 (MQ=255) ttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:1201327‑M2/58‑58 (MQ=255) atggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTa > 1:520116‑M2/54‑71 (MQ=255) tggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGc < 1:298316‑M2/16‑1 (MQ=255) gctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:2499759‑M2/51‑51 (MQ=255) cagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTAcagcag > 1:906539‑M2/47‑70 (MQ=255) cagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGa < 1:1167718‑M2/25‑1 (MQ=255) agatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGaa < 1:951466‑M2/26‑1 (MQ=255) gatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:2240504‑M2/45‑45 (MQ=255) atgacaaacatgatctcatatcagggacttgttcgcaccttccTTa < 1:1840082‑M2/3‑1 (MQ=255) acaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGc < 1:975258‑M2/31‑1 (MQ=255) caaacatgatctcatatcagggacttgttcgcaccttccTTa > 1:186448‑M2/40‑42 (MQ=255) caaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGcc < 1:2023512‑M2/32‑1 (MQ=255) aaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGa > 1:537392‑M2/39‑48 (MQ=255) aaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGaaa > 1:547313‑M2/39‑65 (MQ=255) aacatgatctcatatcagggacttgttcgcaccttcct < 1:471833‑M2/1‑1 (MQ=255) aacatgatctcatatcagggacttgttcgcaccttccTTAg < 1:761227‑M2/4‑1 (MQ=255) acatgatctcatatcagggacttgttcgcaccttcctt < 1:2233804‑M2/2‑1 (MQ=255) acatgatctcatatcagggacttgttcgcaccttcct > 1:433466‑M2/37‑37 (MQ=255) catgatctcatatcagggacttgttcgcaccttcctt > 1:2003466‑M2/36‑37 (MQ=255) catgatctcatatcagggacttgttcgcaccttccTTa > 1:1048779‑M2/36‑38 (MQ=255) catgatctcatatcagggacttgttcgcaccttccTTa > 1:682841‑M2/36‑38 (MQ=255) catgatctcatatcagggacttgttcgcaccttccTTAg < 1:1603370‑M2/4‑1 (MQ=255) atgatctcatatcagggacttgttcgcaccttccTTAGTa > 1:470449‑M2/35‑40 (MQ=255) ctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGaa < 1:1750413‑M2/26‑1 (MQ=255) atatcagggacttgttcgcaccttccTTAGTACTGa > 1:2051912‑M2/27‑36 (MQ=255) atatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGaaa > 1:1821913‑M2/27‑53 (MQ=255) atatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAAttttt < 1:770954‑M2/45‑1 (MQ=255) atatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAAtt < 1:871296‑M2/42‑1 (MQ=255) atatcagggacttgttcgcaccttccTTAGTACTGATGCAGATACAGCAGaaa > 1:1339479‑M2/27‑53 (MQ=255) tatcagggacttgttcgcaccttccTTAGTACTGa < 1:1465991‑M2/10‑1 (MQ=255) tatcagggacttgttcgcaccttccTTAGTACTGa < 1:144165‑M2/10‑1 (MQ=255) tatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTAca < 1:1710018‑M2/20‑1 (MQ=255) tcagggacttgttcgcagcttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCa > 1:480292‑M2/24‑56 (MQ=255) tcagggacttgttcgcaccttccTTAGTACTGATGCAGCTAcag > 1:2580534‑M2/24‑44 (MQ=255) tcagggacttgttcgcaccttccTTAGTACTGATGCAGCTAcag > 1:1650248‑M2/24‑44 (MQ=255) tcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCa > 1:214280‑M2/24‑71 (MQ=255) gggacttgttcgcaccttccTTAGTACTGATGCAGCTa > 1:624259‑M2/21‑38 (MQ=255) ggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGt < 1:2283897‑M2/52‑1 (MQ=255) caccttccTTAGTACTGATGCAGCTACAGCAGaaa > 1:2591834‑M2/9‑35 (MQ=255) caccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCttttt < 1:11816‑M2/63‑1 (MQ=255) ccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAAtttt < 1:402767‑M2/44‑1 (MQ=255) cttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTTTg < 1:2460272‑M2/66‑1 (MQ=255) tccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGt > 1:1671871‑M2/4‑55 (MQ=255) tccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTTTGaa > 1:314966‑M2/4‑71 (MQ=255) cTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTTTGAAc > 1:28351‑M2/2‑70 (MQ=255) | ACTTTCCCGTACAGATCCAGCTTGTTACTGTCTTTATTATAAATTTCAGCTGCCTGAGCAGACATCGCCATTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTTTGAAC > W3110S.gb/575930‑576068 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |