| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 2018571 = | 3 (0.110) | 20 (0.780) | 16/92 | NT | 87.7% | coding (567/687 nt) | fliH | flagellar biosynthesis protein |
| ? | W3110S.gb | 2519723 = | NA (NA) | intergenic (+33/‑54) | nupC/insL | nucleoside (except guanosine) transporter/predicted transposase | |||||
CCCGGATGATCTGCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTG > W3110S.gb/2018502‑2018638 | gtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatgg > 1:1800288‑M1/70‑71 (MQ=255)gtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatgg < 1:1743043‑M1/2‑1 (MQ=255)gtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatgg < 1:1279188‑M1/2‑1 (MQ=255)gtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatgg < 1:434459‑M1/2‑1 (MQ=255)gtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatg > 1:1040711‑M1/70‑70 (MQ=255) tgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatggg > 1:2123489‑M1/69‑71 (MQ=255) gagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatgg < 1:1038382‑M1/2‑1 (MQ=255) gagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatgg > 1:1739634‑M1/68‑69 (MQ=255) ggATGATCTGCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGc > 1:1438896/1‑70 (MQ=255) ggATGATCTGCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGc > 1:1435834/1‑70 (MQ=255) agtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcatatGGCCGAt < 1:2241112‑M1/7‑1 (MQ=255) taattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGa > 1:817448‑M1/63‑68 (MQ=255) cAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATccc < 1:2117632/66‑1 (MQ=255) cAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCAC < 1:881784‑M1/68‑1 (MQ=255) cAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCAC < 1:1245507‑M1/68‑1 (MQ=255) tcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATccc > 1:1563563‑M1/56‑65 (MQ=255) aCGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCat > 1:2406128‑M1/1‑67 (MQ=255) ggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatggg > 1:419105‑M1/54‑56 (MQ=255) ggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCa > 1:237837‑M1/54‑71 (MQ=255) ggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCa < 1:197303‑M1/18‑1 (MQ=255) gtgtGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagc < 1:209198‑M1/71‑7 (MQ=255) acgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATc < 1:2193061‑M1/20‑1 (MQ=255) tgGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgc > 1:478892‑M1/1‑62 (MQ=255) ttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCa < 1:2187823‑M1/11‑1 (MQ=255) ttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCAcc < 1:1799135‑M1/13‑1 (MQ=255) gatgatATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATcc > 1:2198117/1‑56 (MQ=255) gatgatATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaa > 1:2194559‑M1/1‑60 (MQ=255) atgatATGCTCGGCGCTACCTTAAGTTTTCATGGCTGGCGCTTGCGGGGc < 1:2165800/50‑1 (MQ=255) gatATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCgg < 1:761182/45‑1 (MQ=255) tGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATcc < 1:62014/49‑1 (MQ=255) tGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgcta < 1:1033942‑M1/63‑11 (MQ=255) tGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACC < 1:2337661‑M1/53‑1 (MQ=255) tatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTa > 1:1486808‑M1/40‑71 (MQ=255) tatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTa > 1:1489901‑M1/40‑71 (MQ=255) cTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaaggg < 1:2050285‑M1/70‑20 (MQ=255) tcaggcgtaataccacaacccttaagttagcgcttatg < 1:972513‑M1/1‑1 (MQ=255) tcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTaaa > 1:1060833‑M1/38‑71 (MQ=255) tcaggcgtaataccacaacccttaagtcagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTa < 1:58866‑M1/32‑1 (MQ=255) tCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggtt > 1:760574‑M1/1‑50 (MQ=255) tCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggtt > 1:2046288‑M1/1‑50 (MQ=255) caggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTaaa > 1:2160802‑M1/37‑70 (MQ=255) aggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTgg < 1:1334615‑M1/24‑1 (MQ=255) gcgcTACCTTAAGTTTGCATGGCTGGCGCTTGCgg < 1:1401508/35‑1 (MQ=255) gcTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaacc < 1:914524‑M1/71‑27 (MQ=255) cgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGtctc > 1:2512748‑M1/33‑71 (MQ=255) cgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGtctc > 1:2515645‑M1/33‑71 (MQ=255) cTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaacca > 1:1139882‑M1/1‑44 (MQ=255) cTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCACACCataagccctaacttaagggttgaacca > 1:839473‑M1/1‑44 (MQ=255) ataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTccgcc > 1:891215‑M1/29‑71 (MQ=255) ttAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctg > 1:897148‑M1/1‑39 (MQ=255) tAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctg > 1:2398294‑M1/1‑38 (MQ=255) tAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctg > 1:1354211‑M1/1‑38 (MQ=255) acaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTaa > 1:2322610‑M1/24‑56 (MQ=255) tttGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaacca < 1:69387‑M1/61‑28 (MQ=255) ttGCATGGCTGGCGCTTGCGGGGCGATCCCACAataagcgctaacttaagggttgaaccatctgaagaat > 1:184622‑M1/1‑33 (MQ=255) cttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGaa > 1:2144641‑M1/18‑66 (MQ=255) ttaagttagcgcttatGGGCGATCCCACCCTCCAt > 1:550875‑M1/17‑35 (MQ=255) ttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGt > 1:372292‑M1/17‑47 (MQ=255) gctggcGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcc > 1:2622105‑M1/1‑26 (MQ=255) agttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGAtctc > 1:408584‑M1/14‑71 (MQ=255) tggcGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctc > 1:1080760‑M1/1‑24 (MQ=255) tggcGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctc > 1:821227‑M1/1‑24 (MQ=255) gcgcTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcg > 1:1713229‑M1/1‑22 (MQ=255) ttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAgt < 1:1842435‑M1/67‑1 (MQ=255) tGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaa > 1:88665‑M1/1‑17 (MQ=255) tGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaa > 1:964762‑M1/1‑17 (MQ=255) gCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgtga > 1:2379010‑M1/1‑16 (MQ=255) gCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctc > 1:1964871‑M1/1‑16 (MQ=255) gCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgcga > 1:1167554‑M1/1‑16 (MQ=255) gCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgcga > 1:2248311‑M1/1‑16 (MQ=255) atGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAgt > 1:101016‑M1/3‑69 (MQ=255) | CCCGGATGATCTGCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTG > W3110S.gb/2018502‑2018638 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |