| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 2018571 = | 3 (0.110) | 20 (0.780) | 16/92 | NT | 87.7% | coding (567/687 nt) | fliH | flagellar biosynthesis protein |
| ? | W3110S.gb | 2519723 = | NA (NA) | intergenic (+33/‑54) | nupC/insL | nucleoside (except guanosine) transporter/predicted transposase | |||||
AGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCT > W3110S.gb/2519652‑2519788 | aGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATAC‑‑AAAAAAGCCGGGGATAATTCCCa > 1:1899314/1‑70 (MQ=255) gCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATa < 1:92610/69‑1 (MQ=255) tCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAgc < 1:1167602/68‑1 (MQ=255) tCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCt < 1:2234086/71‑1 (MQ=255) tGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTTCCATAAGCGCTaa > 1:1362873/1‑71 (MQ=255) tGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTaa > 1:1213668/1‑71 (MQ=255) gcagcaCTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGtt > 1:2483927/1‑71 (MQ=255) tGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTAc < 1:2521320/71‑1 (MQ=255) gCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACg > 1:1932812/1‑71 (MQ=255) cTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACtt < 1:1230378/52‑1 (MQ=255) tAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTaa > 1:219644/1‑51 (MQ=255) aaGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGa > 1:310469/1‑71 (MQ=255) aGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGa > 1:1310047/1‑70 (MQ=255) aGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGa > 1:1306904/1‑70 (MQ=255) gACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGata < 1:1458356/71‑1 (MQ=255) catacataAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTgg < 1:432976/54‑1 (MQ=255) atacataAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTaa > 1:1891744/1‑44 (MQ=255) tacataAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGAtt > 1:2372646/1‑71 (MQ=255) ataAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTAt > 1:572046/1‑52 (MQ=255) taAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTtg < 1:2049760/45‑1 (MQ=255) taAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTgg < 1:1919986/48‑1 (MQ=255) taAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTAt < 1:2003538/51‑1 (MQ=255) taAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGTTTTAAc < 1:2213/71‑1 (MQ=255) taAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGAt < 1:2173627/66‑1 (MQ=255) aaaaaGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGGTGTGGTATTACGCCTGATATGATTTAACGt > 1:2107464/1‑71 (MQ=255) aGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTtgtg > 1:2164531/1‑41 (MQ=255) ggggATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATg > 1:876126/1‑70 (MQ=40) aTTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGaa > 1:192338/1‑65 (MQ=33) aTTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTActc > 1:2552268/1‑71 (MQ=32) ttCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTActct > 1:2182736/1‑71 (MQ=31) ttCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTActct > 1:1877327/1‑71 (MQ=31) | AGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCT > W3110S.gb/2519652‑2519788 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |