| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 315707 | NA (NA) | 50 (1.840) | 33/98 | NT | 100% | coding (654/687 nt) | ykgA | predicted DNA‑binding transcriptional regulator |
| ? | W3110S.gb | 576911 = | 0 (0.000) | coding (76/498 nt) | ybcS | predicted lysozyme | |||||
Only 100 of 102 total aligned reads displayed.
TCCATCATTACGAAAAGCCGTTGCTGCTGCTATTGGTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGGTGTATG > W3110S.gb/576841‑576981 | cctcagtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaa < 1:2357850‑M2/1‑1 (MQ=255)cctcagtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaa < 1:1604301‑M2/1‑1 (MQ=255) ctcagtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaAc < 1:1815520‑M2/2‑1 (MQ=255) catcatTACGAAAAGCCGTTGCTGCTGCTATTGGTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACt > 1:1644182/1‑71 (MQ=255) catcatTACGAAAAGCCGTTGCT‑CTGCTATTGGTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACTt < 1:418677‑M2/71‑2 (MQ=255) cagtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaACt > 1:654066‑M2/68‑70 (MQ=255) tcatTACGAAAAGCCGTTGCTGCTGCTATTGGTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACTtg > 1:229888‑M2/1‑69 (MQ=255) tcatTACGAAAAGCCGTTGCTGCTGCTATTGGTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACTt < 1:2134555‑M2/70‑2 (MQ=255) agtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaACTgg > 1:663416‑M2/67‑71 (MQ=255) agtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaACTgg > 1:398286‑M2/67‑71 (MQ=255) agtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaACTg < 1:227545‑M2/4‑1 (MQ=255) gtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaACTGGc > 1:281194‑M2/66‑71 (MQ=255) ttACGAAAAGCCGTTGCTGCTGCTATTGGTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACTtgatc < 1:1703343‑M2/71‑6 (MQ=255) cggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaACTGGccc > 1:850054‑M2/63‑70 (MQ=255) cggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaACTGGccc > 1:920568‑M2/63‑70 (MQ=255) aCGAAAAGCCGTTGCTGCTGCTATTGGTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACTtgatct < 1:1106331‑M2/70‑7 (MQ=255) gaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaACTGGCCCAAg > 1:755330‑M2/61‑71 (MQ=255) aacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaACTGGCCCAAGt > 1:1311919‑M2/60‑71 (MQ=255) acaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaACTGGCCCAAGTg < 1:1549566‑M2/13‑1 (MQ=255) caatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaACTgg < 1:552407‑M2/5‑1 (MQ=255) ttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaACTGGCCCAAGTGGt < 1:1104842‑M2/15‑1 (MQ=255) tgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaACTGGCCCAAGTGGTAAc < 1:1672996‑M2/18‑1 (MQ=255) cGTTGCTGCTGCTATTGGTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACTtgatcttacccagcaa > 1:1904967‑M2/1‑55 (MQ=255) gaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaa < 1:119268‑M2/1‑1 (MQ=255) gTTGCTGCTGCTATTGGTGGCGGAGCAATTCCTATAGCATCAGTGTTAATCACTtgatcttacccagcaat > 1:2191462‑M2/1‑54 (MQ=255) ttGCTGCTGCTATTGGTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACTtgatcttacccagcaa > 1:695705‑M2/1‑53 (MQ=255) aaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaACTGGCCCAAGTGGTAACGa < 1:527361‑M2/20‑1 (MQ=255) aaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaACTGGCCCAAGTGGTAACGa < 1:1291120‑M2/20‑1 (MQ=255) aaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaACTGGCCCAAGTGGTAACGa < 1:2640657‑M2/20‑1 (MQ=255) aaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaACTGG‑CCAAGTGGTAACGATg < 1:682292‑M2/21‑1 (MQ=255) aacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaACTGGCCCAAGTGGTAACGATgg > 1:500508‑M2/49‑71 (MQ=255) ctgctgctATTGGTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACTtgatcttacccagcaatagtg > 1:1348400‑M2/1‑50 (MQ=255) ctgctgctATTGGTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACTtgatcttacccagcaatagtg > 1:2113017‑M2/1‑50 (MQ=255) agaacctcgcttaggcctgtgtccatattacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTg > 1:2016148‑M2/45‑71 (MQ=255) agaacctcgcttaggcctgtgtccatattacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTg > 1:2013113‑M2/45‑71 (MQ=255) tgctATTGGTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACTtgatcttacccagcaatagtggaca < 1:2180032‑M2/71‑26 (MQ=255) tATTGGTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACTtgatcttacccagcaatagtgga > 1:610714‑M2/1‑43 (MQ=255) ttGGTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACTtgat < 1:567932‑M2/45‑5 (MQ=255) tcgcttaggcctgtgtccatattacgtgggtaggatcaACTGGCCCAAGTg > 1:358242‑M2/39‑51 (MQ=255) cgcttaggcctgtgtccatattacgtgggtaggatcaa > 1:1002994‑M2/38‑38 (MQ=255) cgcttaggcctgtgtccatattacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGgtg > 1:1978592‑M2/38‑71 (MQ=255) cgcttaggcctgtgtccatattacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGgtg > 1:14624‑M2/38‑71 (MQ=255) cgcttaggcctgtgtccatattacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGgt > 1:606502‑M2/38‑70 (MQ=255) ggtggCGGAGCAATTGCTATAGCATCAGTGTTAATCACTtgatcttacccagcaatag < 1:1818602‑M2/58‑20 (MQ=255) gtggCGGAGCAATTGCTATAGCATCAGTGTTAATCACTtgatcttacccagcaatagtggacacgcggcta > 1:322432‑M2/1‑38 (MQ=255) gtggCGGAGCAATTGCTATAGCATCAGTGTTAATCACTtgatcttacccagcaatagtggacacgcggcta > 1:1984698‑M2/1‑38 (MQ=255) gtggCGGAGCAATTGCTATAGCATCAGTGTTAATCACTtgatcttacccagcaatagtggacacgcggcta > 1:1622925‑M2/1‑38 (MQ=255) ttaggcctgtgtccatattacgtgggtaggatcaACTGGCCCAAGTGGTAACGAt > 1:1923409‑M2/35‑55 (MQ=255) tggCGGAGCAATTGCTATAGCATCAGTGTTAATCACTtgatcttacccagcaatagtggacacgcggcta > 1:129685‑M2/1‑37 (MQ=255) aggcctgtgtccatattacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTgg < 1:1345135‑M2/28‑1 (MQ=255) ggcctgtgtccatattacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGt > 1:778933‑M2/32‑55 (MQ=255) ggcctgtgtccatattacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCt < 1:335727‑M2/40‑1 (MQ=255) cGGAGCAATTGCTATAGCATCAGTGTTAATCACTtgatcttacccagcaatagtggacacgcggctaagtg > 1:183342‑M2/1‑34 (MQ=255) ctgtgtccatattacgtgggtaggatcaACTGGCCCAAGTGGTAAc < 1:1984921‑M2/18‑1 (MQ=255) ctgtgtccatattacgtgggtaggatcaACTGGCCCAAGTGGTAACGa > 1:1229225‑M2/29‑48 (MQ=255) tgtgtccatattacgggggtaggatcaACTGGCCCaa < 1:2215720‑M2/10‑1 (MQ=255) gCAATTGCTATAGCATCAGTGTTAATCACTtgatcttacccagcaatagtggacacgcggctaagtgagta > 1:2248965‑M2/1‑30 (MQ=255) gCAATTGCTATAGCATCAGTGTTAATCACTtgatcttacccagcaatagtggacacgcggctaagt < 1:1921191‑M2/66‑37 (MQ=255) gCAATTGCTATAGCATCAGTGTTAATCACTtgatcttacccagcaatagtggacacgcggctaagt < 1:1918182‑M2/66‑37 (MQ=255) tgtccatattacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTAcatac > 1:1064910‑M2/26‑71 (MQ=255) tccatattacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAg > 1:874030‑M2/24‑61 (MQ=255) tccatattacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAg > 1:815236‑M2/24‑61 (MQ=255) tccatattacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAg > 1:1934227‑M2/24‑61 (MQ=255) gCTATAGCATCAGTGTTAATCACTtgatcttacccagcaatagtggacacgcggctaag < 1:2412068‑M2/59‑36 (MQ=255) catattacgtgggtaggatcaACTGGCCCAAGTGGTAACGATg > 1:1064757‑M2/22‑43 (MQ=255) catattacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTAcataccata > 1:282251‑M2/22‑71 (MQ=255) catattacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTAcataccata > 1:875890‑M2/22‑71 (MQ=255) cTATAGCATCAGGGTTAATCACTtgatcttacccagcaatagtggacacgcggctaagtgagtaaactct > 1:813941‑M2/1‑23 (MQ=255) tattacgtgggttggatcaACTGGCCCAAGTGGTAAcgt < 1:1414291‑M2/20‑2 (MQ=255) tattacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGa < 1:752619‑M2/29‑1 (MQ=255) tattacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTAcataccatac > 1:2136026‑M2/20‑70 (MQ=255) ttacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGa > 1:1868334‑M2/18‑46 (MQ=255) ttacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTAca < 1:2368426‑M2/43‑1 (MQ=255) tacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGt > 1:657441‑M2/17‑40 (MQ=255) tacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGaa < 1:270752‑M2/30‑1 (MQ=255) aGCATCAGTGTTAATCACTtgatcttacccagcaa > 1:1975625‑M2/1‑19 (MQ=255) gCATCAGTGTTAATCACTtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtca > 1:2493035‑M2/1‑18 (MQ=255) gCATCAGTGTTAATCACTtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtca > 1:29022‑M2/1‑18 (MQ=255) gCATCAGTGTTAATCACTtgatcttacccagcaatagtggacacgaggct > 1:1789803‑M2/1‑18 (MQ=255) gCATCAGTGTTAATCACTtgatcttacccagcaatag < 1:1139771‑M2/37‑20 (MQ=255) acgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTc > 1:900856‑M2/16‑40 (MQ=255) acgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAgg > 1:536855‑M2/16‑47 (MQ=255) acgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAACTAcata > 1:498824‑M2/16‑60 (MQ=255) cgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGa > 1:1899659‑M2/15‑70 (MQ=255) cATCAGTGTTAATCACTtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcag > 1:125823‑M2/1‑17 (MQ=255) tCAGTGTTAATCACTtgatcttacccagcaatagtg > 1:1893447‑M2/1‑15 (MQ=255) ggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATAtt < 1:1188998‑M2/60‑1 (MQ=255) ggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATAtt < 1:2596151‑M2/60‑1 (MQ=255) gtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATAttgt > 1:1128206‑M2/10‑71 (MQ=255) tgtTAATCACTtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagag < 1:1758516‑M2/67‑57 (MQ=255) aggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATAttgttg > 1:1116780‑M2/8‑71 (MQ=255) atcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGttggag > 1:1143735‑M2/5‑69 (MQ=255) tcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAg > 1:2169537‑M2/4‑41 (MQ=255) tcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTAca > 1:286892‑M2/4‑46 (MQ=255) tcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGgtgt < 1:2130134‑M2/68‑1 (MQ=255) tcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGgtg > 1:73809‑M2/4‑70 (MQ=255) tcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGgtg > 1:2406587‑M2/4‑70 (MQ=255) caACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTAcat < 1:410379‑M2/44‑1 (MQ=255) aCTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGGTGTATg < 1:1826115/71‑1 (MQ=255) aCTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGGTGTATg < 1:2188245/71‑1 (MQ=255) | TCCATCATTACGAAAAGCCGTTGCTGCTGCTATTGGTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGGTGTATG > W3110S.gb/576841‑576981 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |