| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 566000 = | NA (NA) | 27 (0.960) | 14/100 | NT | 100% | intergenic (+90/‑56) | ybcD/insE | DLP12 prophage region; ECK0532:JW0527:b4508; predicted replication protein fragment/IS3 element protein InsE |
| ? | W3110S.gb | = 576913 | 0 (0.000) | coding (78/498 nt) | ybcS | predicted lysozyme | |||||
ACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/566057‑566000‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGTGATTAACACTGATGCTATAGCAATTGCTCCGCCACCAATAGCAGCAGCAACGGCTTTTCGTAATGA < W3110S.gb/576913‑576845 ACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACACT > 1:611030/1‑71 CTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACACTGATG > 1:1092146/1‑71 GAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAA < 1:1339604/57‑1 AGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACACTGATGCTATAG > 1:798341/1‑70 AGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACACTGATGCTATAG > 1:1611716/1‑70 AGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACA > 1:2655788/1‑58 TTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGT < 1:2347119/46‑1 TTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACACTGATGCTATAGCAATTc > 1:1634738/1‑70 TTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACACTGATGCTATAGCAATTG > 1:1197207/1‑71 TTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACACTGATGCTATAGCAATTG > 1:2413596/1‑71 TTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACACTGATGCTATAGCAATTG > 1:2083801/1‑71 TAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACACTGATGCTATAGCAA > 1:1811592/1‑59 TAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACACT > 1:226882/1‑46 TAGCCGCGTGTCAACTATTGCTGGGTAAGATCAAGTGATTAACACTGATGCTATAGC < 1:1556507/57‑1 GCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACACTGATGCTATAGCA < 1:1836662/53‑1 GCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACACTGATGCTATAGCA < 1:252479/53‑1 GTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACACTGATGCTATAGCAATTGCTCCGCCACCAATAGC < 1:1632805/71‑1 GTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACACTGATGCTATAGCAAT > 1:18882/1‑53 GTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACACTGATGCTATAGCAAT > 1:1573433/1‑53 GTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACACTGATGCTATAGCAAT > 1:88873/1‑53 GTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACACTGATGCTATAGCAAT > 1:388710/1‑53 TCCACTATTGCTGGGTAAGATCAAGTGATTAACACTGATGCTATA > 1:1407834/1‑45 ACTATTGCTGGGTAAGATCAAGTGATTAACACTGATGCTATAGCAATTGCTCCGCCACCAATAGCAGCAGC < 1:2246963/71‑1 ACTATTGCTGGGTAAGATCAAGTGATTAACACTGATGCTATAGCAATTGCTCCGCCACCAATAGCAGCAGC < 1:1334508/71‑1 CTATTGCTGGGTAAGATCAAGTGATTAACACTGATGCTATAGC < 1:892483/43‑1 GCTGGGTAAGATCAAGTGATTAACACTGATGCTATAG > 1:2451386/1‑37 AGATCAAGTGATTAACACTGATGCTATAGCAATTGCTCCGCCACCAATAGCAGCAGCAACGGCTTTTCGT > 1:2230385/1‑70 AGATCAAGTGATTAACACTGATGCTATAGCAATTGCTCCGCCACCAATAGCAGCAGCAACGGCTTTTCGT > 1:2116411/1‑70 GATCAAGTGATTAACACTGATGCTATAGCAATTGCTCCGC < 1:419467/40‑1 ATCAAGTGATTAACACTGATGCTATAGCAATTGCTCCGCCACCAATAGCAGCAGCAACGGCTTTTCGTAAT < 1:593700/71‑1 TCAAGTGATTAACACTGATGCTATAGCAATTGCTCCGCCACCAATAGCAGCAGCAACGGCTTTTCGTAAT > 1:468578/1‑70 CAAGTGATTAACACTGATGCTATAGCAATTGCTCCGCCACCAATAGCAGCAGCAACGGCTTTTCGTAATGA > 1:2659348/1‑71 CAAGTGATTAACACTGATGCTATAGCAATTGCTCCGCCACCAATAGCAGCAGCAACGGCTTTTCGTAATGA > 1:622184/1‑71 CAAGTGATTAACACTGATGCTATAGCAATTGCTCCGCCACCAATAGCAGCAGCAACGGCTTTTCGTAATGA > 1:1294616/1‑71 CAAGTGATTAACACTGATGCTATAGCAATTGCTCCGCCACCAATAGCAG > 1:1447013/1‑49 ACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/566057‑566000‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGTGATTAACACTGATGCTATAGCAATTGCTCCGCCACCAATAGCAGCAGCAACGGCTTTTCGTAATGA < W3110S.gb/576913‑576845 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |