| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2173564 | NA (NA) | 38 (1.390) | 17/98 | NT | 100% | pseudogene (307/2041 nt) pseudogene (307/339 nt) |
gatR gatR |
DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 DNA‑binding transcriptional regulator, C‑ter fragment; ECK2083:JW2074:b2090 |
| ? | W3110S.gb | 3920278 = | 0 (0.000) | coding (91/213 nt) | cspA | major cold shock protein | |||||
GCCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCa‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/2173495‑2173564‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGATA > W3110S.gb/3920278‑3920348 GCCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCA < 1:1498207/71‑1GCCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCA < 1:1378059/71‑1 CTCAGCCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACA > 1:2120531/1‑71 AGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACAT > 1:1167212/1‑71 AGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACAT > 1:456000/1‑71 AGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACAT > 1:2667786/1‑71 AGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACAT > 1:2095345/1‑71 GTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCA < 1:588085/65‑1 CGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCggt > 1:1770377/1‑68 CGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCgg > 1:1530160/1‑68 CGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTT < 1:1358234/70‑1 ACAATTTGAAAACAAGAACCTCGCTTAGTCCTGTGTCCATATTACGTGGGTAGGATCACAC > 1:494484/1‑61 ACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACAC > 1:1770675/1‑61 ACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACAC > 1:1657114/1‑61 ATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTT < 1:618320/63‑1 ATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTT < 1:974318/63‑1 ATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCA < 1:2178060/55‑1 TTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTA > 1:1291903/1‑63 TTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTA > 1:1075682/1‑63 TTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTA > 1:948769/1‑63 TTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTT > 1:351986/1‑62 TGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCG > 1:2350499/1‑71 TGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCG > 1:1027400/1‑71 TGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACA > 1:579702/1‑56 TGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCA > 1:484657/1‑52 TGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCA > 1:844792/1‑52 AAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTC < 1:1343292/71‑1 CAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCA < 1:523017/46‑1 CAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCA < 1:1425015/46‑1 CAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCA < 1:663735/46‑1 AGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCA < 1:2307824/44‑1 GAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGT > 1:1354895/1‑70 AACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACt > 1:2044406/1‑45 CCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCA < 1:922926/40‑1 CCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCA < 1:2439912/40‑1 CCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCA < 1:1507556/40‑1 TCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCA < 1:459592/38‑1 TCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCA < 1:768828/38‑1 TCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCA < 1:939434/38‑1 TCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCA < 1:1623866/38‑1 TCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCA < 1:166739/38‑1 GCTTAAGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTA > 1:1548605/1‑46 GCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGTTGAAGCCGAAG < 1:949220/70‑1 CTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAG < 1:230984/51‑1 CTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAG < 1:38556/51‑1 TGTGTCCATATTACGTGGGTAGGATCACACATCTTTAG < 1:1499012/38‑1 TGTGTCCATATTACGTGGGTAGGATCACACATCTTT < 1:2152899/36‑1 TGTGTCCATATTACGTGGGTAGGATCACACATCTTT < 1:2584987/36‑1 TGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAG < 1:1062487/48‑1 TGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAG < 1:1944043/48‑1 TGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAG < 1:1427395/48‑1 TGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAG < 1:2511198/48‑1 TGTCCATATTACGTGGGTAGGATCACACATCTTTAGAG > 1:2640383/1‑38 TGTCCATATTACGTGGGTAGGATCACACATCTTTAGAG > 1:1468087/1‑38 TCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGT < 1:2521920/43‑1 TCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGT < 1:1181292/43‑1 TCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGT < 1:2468692/43‑1 TCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGT < 1:340624/43‑1 TCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGT < 1:857524/43‑1 TATTACGTGGGTAGGATCACACATC‑TTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCC < 1:1911113/60‑1 TTACGTGGGTAGGATGACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTT > 1:1649740/1‑71 TTACGTGGGTAGGATCACACATCTTTAGAGCCTTCGTCAGG < 1:1110862/41‑1 TTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGA > 1:2323633/1‑49 TTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGA > 1:1986294/1‑49 ACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTG > 1:2567881/1‑70 TAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTT > 1:1300985/1‑71 GATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTAC < 1:814724/71‑1 GATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTAC < 1:2507923/71‑1 ACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGATA > 1:800707/1‑71 ACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGATA > 1:2053586/1‑71 ACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGATA > 1:2138702/1‑71 ACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGATA > 1:2510381/1‑71 ACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGAT > 1:188128/1‑70 GCCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCa‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/2173495‑2173564‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGATA > W3110S.gb/3920278‑3920348 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |