| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2173564 | NA (NA) | 38 (1.390) | 17/98 | NT | 100% | pseudogene (307/2041 nt) pseudogene (307/339 nt) |
gatR gatR |
DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 DNA‑binding transcriptional regulator, C‑ter fragment; ECK2083:JW2074:b2090 |
| ? | W3110S.gb | 3920278 = | 0 (0.000) | coding (91/213 nt) | cspA | major cold shock protein | |||||
Only 100 of 131 total aligned reads displayed.
GTGAAGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGATA > W3110S.gb/3920208‑3920348 | gcctcagtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatca < 1:1498207‑M2/1‑1 (MQ=255)gcctcagtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatca < 1:1378059‑M2/1‑1 (MQ=255) ctcagcccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaca > 1:2120531‑M2/69‑71 (MQ=255) aaGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACAC < 1:1155285‑M2/71‑1 (MQ=255) aaGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACAC < 1:1461114‑M2/71‑1 (MQ=255) aGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACt > 1:1855976‑M2/1‑70 (MQ=255) aGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACt > 1:926166‑M2/1‑70 (MQ=255) aGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACt > 1:2321938‑M2/1‑70 (MQ=255) aGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACt > 1:2326811‑M2/1‑70 (MQ=255) ggACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtg > 1:393433‑M2/1‑69 (MQ=255) agtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACAt > 1:2095345‑M2/66‑71 (MQ=255) agtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACAt > 1:456000‑M2/66‑71 (MQ=255) cggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACActtcggt > 1:1770377‑M2/62‑68 (MQ=255) cggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACttcgg > 1:1530160‑M2/62‑68 (MQ=255) cggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCtt < 1:1358234‑M2/9‑1 (MQ=255) tCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacc < 1:1733206‑M2/71‑11 (MQ=255) tCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatctta > 1:2086178‑M2/1‑61 (MQ=255) acaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcacac > 1:1770675‑M2/58‑61 (MQ=255) atttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCtt < 1:618320‑M2/9‑1 (MQ=255) ttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCttt > 1:351986‑M2/53‑62 (MQ=255) ttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTa > 1:1291903‑M2/53‑63 (MQ=255) ttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTa > 1:1075682‑M2/53‑63 (MQ=255) ttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTa > 1:948769‑M2/53‑63 (MQ=255) tgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcacaca > 1:579702‑M2/52‑56 (MQ=255) tgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatca > 1:484657‑M2/52‑52 (MQ=255) tgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatca > 1:844792‑M2/52‑52 (MQ=255) tgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCg > 1:2350499‑M2/52‑71 (MQ=255) tgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCg > 1:1027400‑M2/52‑71 (MQ=255) aaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTc < 1:1343292‑M2/22‑1 (MQ=255) cGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatag < 1:898200‑M2/71‑20 (MQ=255) cGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaa < 1:2061717‑M2/68‑17 (MQ=255) cGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaa < 1:952460‑M2/68‑17 (MQ=255) cGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaa < 1:123315‑M2/68‑17 (MQ=255) tCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtg > 1:1818895‑M2/1‑50 (MQ=255) caagaacctcgcttaggcctgtgtccatattacgtgggtaggatca < 1:523017‑M2/1‑1 (MQ=255) caagaacctcgcttaggcctgtgtccatattacgtgggtaggatca < 1:663735‑M2/1‑1 (MQ=255) cAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtgga > 1:2336324‑M2/1‑48 (MQ=255) cAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtgga > 1:330343‑M2/1‑48 (MQ=255) cAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaa > 1:1959145‑M2/1‑48 (MQ=255) agaacctcgcttaggcctgtgtccatattacgtgggtaggatca < 1:2307824‑M2/1‑1 (MQ=255) aacctcgcttaggcctgtgtccatattacgtgggtaggatcacact > 1:2044406‑M2/42‑45 (MQ=255) cctcgcttaggcctgtgtccatattacgtgggtaggatca < 1:2439912‑M2/1‑1 (MQ=255) cctcgcttaggcctgtgtccatattacgtgggtaggatca < 1:922926‑M2/1‑1 (MQ=255) cctcgcttaggcctgtgtccatattacgtgggtaggatca < 1:1507556‑M2/1‑1 (MQ=255) ttGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtga > 1:1150012‑M2/1‑41 (MQ=255) tcgcttaggcctgtgtccatattacgtgggtaggatca < 1:768828‑M2/1‑1 (MQ=255) tcgcttaggcctgtgtccatattacgtgggtaggatca < 1:166739‑M2/1‑1 (MQ=255) tcgcttaggcctgtgtccatattacgtgggtaggatca < 1:1623866‑M2/1‑1 (MQ=255) tcgcttaggcctgtgtccatattacgtgggtaggatca < 1:459592‑M2/1‑1 (MQ=255) gcttaagcctgtgtccatattacgtgggtaggatcACACATCTTTa > 1:1548605‑M2/36‑46 (MQ=255) tAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggcta > 1:2600916‑M2/1‑38 (MQ=255) tAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggcta > 1:416548‑M2/1‑38 (MQ=255) gcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGTTgaagccgaag < 1:949220‑M2/41‑1 (MQ=255) ctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAg < 1:230984‑M2/24‑1 (MQ=255) tgtgtccatattacgtgggtaggatcACACATCttt < 1:2152899‑M2/10‑1 (MQ=255) tgtgtccatattacgtgggtaggatcACACATCTTTag < 1:1499012‑M2/12‑1 (MQ=255) gTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacg < 1:1316428‑M2/57‑28 (MQ=255) gTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacg < 1:2180411‑M2/57‑28 (MQ=255) gTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacg < 1:2035825‑M2/57‑28 (MQ=255) tgtccatattacgtgggtaggatcACACATCTTTagag > 1:1468087‑M2/25‑38 (MQ=255) tgtccatattacgtgggtaggatcACACATCTTTagag > 1:2640383‑M2/25‑38 (MQ=255) tgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAg < 1:1944043‑M2/24‑1 (MQ=255) tgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAg < 1:1427395‑M2/24‑1 (MQ=255) tgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAg < 1:2511198‑M2/24‑1 (MQ=255) tgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAg < 1:1062487‑M2/24‑1 (MQ=255) cTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaac < 1:2051946‑M2/71‑45 (MQ=255) tccatattacgtgggtaggatcACACATCTTTAGAGCCATCGt < 1:2521920‑M2/21‑1 (MQ=255) tccatattacgtgggtaggatcACACATCTTTAGAGCCATCGt < 1:1181292‑M2/21‑1 (MQ=255) tccatattacgtgggtaggatcACACATCTTTAGAGCCATCGt < 1:340624‑M2/21‑1 (MQ=255) tccatattacgtgggtaggatcACACATCTTTAGAGCCATCGt < 1:857524‑M2/21‑1 (MQ=255) tccatattacgtgggtaggatcACACATCTTTAGAGCCATCGt < 1:2468692‑M2/21‑1 (MQ=255) tGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggact < 1:1036709‑M2/51‑26 (MQ=255) tGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggaca < 1:1962136‑M2/51‑26 (MQ=255) gATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaac > 1:1791115‑M2/1‑24 (MQ=255) tattacgtgggtaggatcACACATC‑TTAGAGCCATCGTCAGGAGTGATgaagccgaagcc < 1:1911113‑M2/42‑1 (MQ=255) tAGCAGAGAAGTGTACGAACACtgatcttacccagcaatag < 1:1922197‑M2/41‑20 (MQ=255) tAGCAGAGAAGTGTACGAACACtgatcttacccagcaatag < 1:2633078‑M2/41‑20 (MQ=255) aGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtg > 1:934038‑M2/1‑21 (MQ=255) aGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtg > 1:405474‑M2/1‑21 (MQ=255) aGCAGAGAAGTGTACGAACACtgatcttacccagcaa > 1:644981‑M2/1‑21 (MQ=255) aGCAGAGAAGTGTACGAACACtgatcttacccagcaa > 1:502365‑M2/1‑21 (MQ=255) ttacgtgggtaggatgACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGtt > 1:1649740‑M2/17‑71 (MQ=255) cAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtc > 1:2678281‑M2/1‑19 (MQ=255) cAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagt < 1:157256‑M2/70‑52 (MQ=255) cAGAGAAGTGTACGAACACtgatcttacccagcaata < 1:645652‑M2/37‑19 (MQ=255) acgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTg > 1:2567881‑M2/15‑70 (MQ=255) gagaAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcag > 1:1656149‑M2/1‑17 (MQ=255) gagaAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcag > 1:1675935‑M2/1‑17 (MQ=255) gagaAGTGTACGAACACtgatcttacccagcaatagtggacacgaggctaagtgagtaaactctcagtcag > 1:1845424‑M2/1‑17 (MQ=255) gagaAGTGTACGAACACtgatcttacccagcaatagtg > 1:141839‑M2/1‑17 (MQ=255) agaAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcag > 1:1360049‑M2/1‑16 (MQ=255) agaAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcag > 1:1954429‑M2/1‑16 (MQ=255) taggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCAttt > 1:1300985‑M2/8‑71 (MQ=255) gatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTAc < 1:2507923‑M2/67‑1 (MQ=255) gatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTAc < 1:814724‑M2/67‑1 (MQ=255) cGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactca < 1:1654395‑M2/71‑65 (MQ=255) acactgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacat > 1:1164905‑M2/1‑4 (MQ=255) ACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGAt > 1:188128‑M2/1‑70 (MQ=255) ACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGATa > 1:800707‑M2/1‑71 (MQ=255) ACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGATa > 1:2138702‑M2/1‑71 (MQ=255) | GTGAAGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGATA > W3110S.gb/3920208‑3920348 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |