| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2855747 | 27 (1.420) | 15 (0.800) | 6/100 | NT | 40.3% | intergenic (‑285/‑2) | ygbA/mutS | hypothetical protein/methyl‑directed mismatch repair protein |
| ? | W3110S.gb | 4124505 = | 18 (0.970) | coding (1/837 nt) | dam | DNA adenine methylase | |||||
CATTTAATATCAGGGAACCGGACATAACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/2855718‑2855747‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAACGGC > W3110S.gb/4124505‑4124574 aATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGC > 1:1344135/2‑69aATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGC > 1:153931/2‑69aATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGG > 1:1044624/2‑68 ATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAG > 1:1361272/1‑63 ATTTAATATCAGTAAACAGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAG > 1:1100104/1‑71 TTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTA > 1:1313994/1‑71 TATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGA < 1:489123/48‑1 TATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGA < 1:1321590/48‑1 TATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGA < 1:319097/48‑1 AACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGA > 1:319920/1‑71 AACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGA > 1:395693/1‑71 CGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGTGCAAGTATCCCCTGCTTGATGA < 1:1404397/71‑1 CGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGA < 1:1219371/71‑1 CGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGA < 1:829315/71‑1 GACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATA > 1:8619/1‑71 ACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAAC > 1:671217/1‑71 ACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAAC > 1:84970/1‑71 CATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAACGGC < 1:341315/71‑1 CATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGAT > 1:914398/1‑61 CATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCACTGCTTGATGA > 1:917673/1‑60 CATTTAATATCAGGGAACCGGACATAACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/2855718‑2855747‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAACGGC > W3110S.gb/4124505‑4124574 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |