| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 1209367 = | 12 (0.310) | 18 (0.700) | 11/68 | NT | 71.9% | coding (290/630 nt) | ycfK | hypothetical protein |
| ? | W3110S.gb | 1211196 = | 6 (0.230) | pseudogene (37/537 nt) | stfE | ECK1143:JW5172:b1157; e14 prophage region; predicted side tail fiber protein fragment | |||||
CCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/1209451‑1209367‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAAC > W3110S.gb/1211196‑1211261 CCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCC < 1:3449556/71‑1CCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCC < 1:2874505/71‑1 AATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTT > 1:313865/1‑71 TCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTT < 1:155473/69‑1 TAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCC > 1:1594971/1‑70 AACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCC > 1:500223/1‑70 ACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCA < 1:2066594/70‑1 CCGGTATAGCTATGAACCCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCC > 1:2560732/1‑68 CCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAA > 1:2466216/1‑71 GGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAAC > 1:2979471/1‑70 GGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAAC > 1:2834039/1‑70 CTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTT < 1:2716019/71‑1 CTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCC < 1:2440089/52‑1 AAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAA < 1:309483/71‑1 AAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAA < 1:3002553/71‑1 AAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCC > 1:516662/1‑54 ACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAA > 1:1285308/1‑71 GGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATG > 1:2224083/1‑70 GGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATG > 1:3060451/1‑70 TGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATG > 1:190696/1‑68 CTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAA > 1:119871/1‑71 CTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAA > 1:3633695/1‑71 ATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAA > 1:1540291/1‑45 TGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACC < 1:3556388/42‑1 TGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACC < 1:1856012/42‑1 GTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGA > 1:3271383/1‑58 GCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAA > 1:1829085/1‑71 CCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAAT > 1:1595354/1‑71 GTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTAT < 1:2291635/44‑1 GTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTAT < 1:3054849/44‑1 GTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTAT < 1:2819118/44‑1 CATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCAT < 1:174279/70‑1 GAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTC > 1:3527182/1‑68 GAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAAT > 1:2264191/1‑58 GAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAAT > 1:206094/1‑58 TTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTT < 1:1978930/70‑1 CCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAG > 1:182609/1‑71 CCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAG < 1:2800068/71‑1 CCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCAT < 1:1667985/53‑1 CCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAA > 1:2623865/1‑46 CCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAA > 1:2543006/1‑46 CTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCA > 1:2865174/1‑69 CTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCA < 1:2918474/69‑1 CTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCA < 1:627876/69‑1 CTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATA > 1:3094996/1‑37 CTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGG > 1:3000045/1‑70 CTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCAT < 1:563367/49‑1 CTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCAT < 1:2695777/49‑1 CTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAA > 1:2237871/1‑43 CTCCCAAACCAACGTTTATGAAAATGAAGAAATAA > 1:3452378/1‑35 CCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATC < 1:552808/48‑1 CCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATC < 1:208008/48‑1 CCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATT > 1:3551707/1‑71 CCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGC < 1:831822/44‑1 CAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCAT > 1:64534/1‑48 AAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTA < 1:875684/71‑1 AAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTA < 1:1427688/71‑1 AAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAA > 1:1821056/1‑38 AAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAA > 1:1617657/1‑38 AACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAA < 1:2942338/71‑1 AACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTA < 1:426726/70‑1 AACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATT < 1:729057/47‑1 ACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTA < 1:3368491/69‑1 ACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAG > 1:1503871/1‑60 ACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAG > 1:2495834/1‑60 CAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAAC > 1:223347/1‑69 CAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAAC > 1:2275461/1‑69 CAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCA > 1:1640553/1‑42 AACGTTTATGAAAATGAAGAAATAACAAGCATATGGC < 1:2201547/37‑1 CCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/1209451‑1209367‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAAC > W3110S.gb/1211196‑1211261 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |