| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 1209367 = | 12 (0.310) | 18 (0.700) | 11/68 | NT | 71.9% | coding (290/630 nt) | ycfK | hypothetical protein |
| ? | W3110S.gb | 1211196 = | 6 (0.230) | pseudogene (37/537 nt) | stfE | ECK1143:JW5172:b1157; e14 prophage region; predicted side tail fiber protein fragment | |||||
CTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTAT > W3110S.gb/1209297‑1209436 | cTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCT > 1:1125365‑M1/1‑71 (MQ=255) ttAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTT < 1:2427875‑M1/69‑1 (MQ=255) gttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTg > 1:223347‑M1/67‑69 (MQ=255) gttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTg > 1:2275461‑M1/67‑69 (MQ=255) ttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGtt < 1:2942338‑M1/6‑1 (MQ=255) aaGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTT > 1:1917021‑M1/1‑71 (MQ=255) aaGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTT > 1:1965240‑M1/1‑71 (MQ=255) aaGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGT < 1:198858‑M1/70‑1 (MQ=255) taaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGttt < 1:875684‑M1/7‑1 (MQ=255) taaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGttt < 1:1427688‑M1/7‑1 (MQ=255) taaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGtt < 1:426726‑M1/6‑1 (MQ=255) taaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGt < 1:3368491‑M1/5‑1 (MQ=255) aatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTgg > 1:3551707‑M1/63‑71 (MQ=255) cccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGgag > 1:3000045‑M1/59‑70 (MQ=255) aaGAATCCGTTTGGCGATATCAAATCTGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGA < 1:1878662‑M1/71‑1 (MQ=255) aGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAG > 1:1238481‑M1/1‑69 (MQ=255) gAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAG < 1:2676994‑M1/71‑1 (MQ=255) ctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGt > 1:2495834‑M1/56‑60 (MQ=255) ctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGt > 1:1503871‑M1/56‑60 (MQ=255) ctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAgg < 1:2800068‑M1/16‑1 (MQ=255) ctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAgg > 1:182609‑M1/56‑71 (MQ=255) tggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAg < 1:2918474‑M1/15‑1 (MQ=255) tggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAg > 1:2865174‑M1/55‑69 (MQ=255) tggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAg < 1:627876‑M1/15‑1 (MQ=255) cGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctct > 1:73186‑M1/1‑67 (MQ=255) cGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGc < 1:1410709/70‑1 (MQ=255) tttGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCaa > 1:2740646/1‑70 (MQ=255) aaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCaa < 1:1978930‑M1/21‑1 (MQ=255) tGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTT > 1:3236481‑M1/1‑54 (MQ=255) gaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTc > 1:3527182‑M1/43‑68 (MQ=255) atatCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacct > 1:2585817‑M1/1‑58 (MQ=255) atatCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacct > 1:1088588‑M1/1‑58 (MQ=255) aatgatgccatttgcttgttatttcttcattttcataaacgTTGGtt < 1:729057‑M1/6‑1 (MQ=255) atgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTg > 1:64534‑M1/41‑48 (MQ=255) atgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATg < 1:174279‑M1/30‑1 (MQ=255) tgatgccatttgcttgttatttcttcattttcataaacgTTg > 1:1640553‑M1/40‑42 (MQ=255) gatgccatttgcttgttatttcttcattttcataaacgTTGGTTTggg < 1:208008‑M1/10‑1 (MQ=255) gatgccatttgcttgttatttcttcattttcataaacgTTGGTTTggg < 1:552808‑M1/10‑1 (MQ=255) atgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGgag < 1:563367‑M1/12‑1 (MQ=255) atgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGgag < 1:2695777‑M1/12‑1 (MQ=255) atgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAgg < 1:1667985‑M1/16‑1 (MQ=255) aaaTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttg < 1:3126170‑M1/70‑18 (MQ=255) aaaTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGT > 1:3682924‑M1/1‑42 (MQ=255) gccatttgcttgttatttcttcattttcataaacgTTGGTTTgg < 1:831822‑M1/9‑1 (MQ=255) gccatatgcttgttatttcttcattttcataaacgtt < 1:2201547‑M1/2‑1 (MQ=255) atttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTc > 1:2264191‑M1/33‑58 (MQ=255) atttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTc > 1:206094‑M1/33‑58 (MQ=255) atttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACgg > 1:1595354‑M1/33‑71 (MQ=255) tttgcttgttatttcttcattttcataaacgTTGGttt > 1:1617657‑M1/32‑38 (MQ=255) tttgcttgttatttcttcattttcataaacgTTGGttt > 1:1821056‑M1/32‑38 (MQ=255) tttgcttgttatttcttcattttcataaacgTTGGTTTGGgag > 1:2237871‑M1/32‑43 (MQ=255) tttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGc > 1:1829085‑M1/32‑71 (MQ=255) gATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtccc < 1:3315425‑M1/71‑25 (MQ=255) ttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAgg > 1:2623865‑M1/31‑46 (MQ=255) ttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAgg > 1:2543006‑M1/31‑46 (MQ=255) tGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTa < 1:2995643/71‑1 (MQ=255) aCTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACAtt < 1:2272509/71‑1 (MQ=255) aCTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACAtt < 1:3439223/71‑1 (MQ=255) aCTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACAtt < 1:3476168/71‑1 (MQ=255) aCTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACAtt < 1:3481227/71‑1 (MQ=255) cTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtc < 1:1065632‑M1/62‑23 (MQ=255) cTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcatta < 1:958049‑M1/50‑11 (MQ=255) cTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcatta < 1:1321464‑M1/50‑11 (MQ=255) cTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcatta < 1:159907‑M1/50‑11 (MQ=255) ttatttcttcattttcataaacgTTGGTTTGGgag > 1:3452378‑M1/24‑35 (MQ=255) ttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAg > 1:119871‑M1/24‑71 (MQ=255) ttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAg > 1:3633695‑M1/24‑71 (MQ=255) tgtgCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCaa < 1:274584/44‑1 (MQ=255) tatttcttcattttcataaacgTTGGTTTGGGAGAAg > 1:3094996‑M1/23‑37 (MQ=255) gtgCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggtt > 1:3641340‑M1/1‑38 (MQ=255) tgCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTa < 1:2036930/68‑1 (MQ=255) tgCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGa > 1:1499894/1‑71 (MQ=255) cAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggc > 1:2345316‑M1/1‑35 (MQ=255) aCGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttc < 1:2264910‑M1/71‑40 (MQ=255) aCGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggt < 1:1226855‑M1/51‑20 (MQ=255) tcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTAc > 1:3271383‑M1/16‑58 (MQ=255) ggCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacc > 1:2214815‑M1/1‑30 (MQ=255) cattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCa > 1:190696‑M1/15‑68 (MQ=255) cattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCAcc > 1:3060451‑M1/15‑70 (MQ=255) cattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCAcc > 1:2224083‑M1/15‑70 (MQ=255) ttttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGt > 1:1285308‑M1/13‑71 (MQ=255) tctcGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttg < 1:1095366‑M1/44‑18 (MQ=255) ttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGttt < 1:309483‑M1/61‑1 (MQ=255) ttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGttt < 1:3002553‑M1/61‑1 (MQ=255) tcGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccact > 1:100994‑M1/1‑25 (MQ=255) tcGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggt > 1:2164724‑M1/1‑25 (MQ=255) gAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgaggccttcagccactc > 1:1951364‑M1/1‑23 (MQ=255) gAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATgcagc < 1:143089/41‑1 (MQ=255) gAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTc < 1:3189565/69‑1 (MQ=255) ataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAAc < 1:3054849‑M1/37‑1 (MQ=255) ataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAAc < 1:2291635‑M1/37‑1 (MQ=255) ataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAAc < 1:2819118‑M1/37‑1 (MQ=255) aaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAg < 1:2716019‑M1/66‑1 (MQ=255) aaCCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggt > 1:2572415‑M1/1‑20 (MQ=255) aaCCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccgg > 1:496119‑M1/1‑20 (MQ=255) cTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCtat < 1:2136433/71‑1 (MQ=255) TTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACAt > 1:1540291‑M1/1‑45 (MQ=255) | CTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTAT > W3110S.gb/1209297‑1209436 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |